miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33296 3' -55 NC_007605.1 + 21866 0.66 0.956703
Target:  5'- aCCCCaGGGucUCCAgGCAGgGUCCggcaucuucAGGGGc -3'
miRNA:   3'- -GGGG-CUU--AGGUgCGUUgCAGG---------UCCUC- -5'
33296 3' -55 NC_007605.1 + 18797 0.66 0.956703
Target:  5'- aCCCCaGGGucUCCAgGCAGgGUCCggcaucuucAGGGGc -3'
miRNA:   3'- -GGGG-CUU--AGGUgCGUUgCAGG---------UCCUC- -5'
33296 3' -55 NC_007605.1 + 12659 0.66 0.956703
Target:  5'- aCCCCaGGGucUCCAgGCAGgGUCCggcaucuucAGGGGc -3'
miRNA:   3'- -GGGG-CUU--AGGUgCGUUgCAGG---------UCCUC- -5'
33296 3' -55 NC_007605.1 + 63785 0.66 0.952867
Target:  5'- cCCCCGGcgCCGC-CGgagagccacGCGUCCAGa-- -3'
miRNA:   3'- -GGGGCUuaGGUGcGU---------UGCAGGUCcuc -5'
33296 3' -55 NC_007605.1 + 60160 0.66 0.952867
Target:  5'- uCCCCGcacCCAgGCGGCuUCCgcAGGGGg -3'
miRNA:   3'- -GGGGCuuaGGUgCGUUGcAGG--UCCUC- -5'
33296 3' -55 NC_007605.1 + 132233 0.66 0.952867
Target:  5'- aCCCCGAAgCCcCGUAg---CCGGGAGu -3'
miRNA:   3'- -GGGGCUUaGGuGCGUugcaGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 133976 0.66 0.952867
Target:  5'- gCCCaCGAcggCCGCGCugAACGUgcCCGGGGc -3'
miRNA:   3'- -GGG-GCUua-GGUGCG--UUGCA--GGUCCUc -5'
33296 3' -55 NC_007605.1 + 124337 0.66 0.948809
Target:  5'- aCCCGGAgcCCAUGUucucGGCccgGUCCAGGAa -3'
miRNA:   3'- gGGGCUUa-GGUGCG----UUG---CAGGUCCUc -5'
33296 3' -55 NC_007605.1 + 160121 0.67 0.944525
Target:  5'- gCUCCGGAUUCACcgGCAcCG-CCAGGuGg -3'
miRNA:   3'- -GGGGCUUAGGUG--CGUuGCaGGUCCuC- -5'
33296 3' -55 NC_007605.1 + 125610 0.67 0.944525
Target:  5'- cCCCCcuGUCCGCccuuCAGCGggCGGGAGg -3'
miRNA:   3'- -GGGGcuUAGGUGc---GUUGCagGUCCUC- -5'
33296 3' -55 NC_007605.1 + 2068 0.67 0.93955
Target:  5'- gCCCCGggUCUaggccgaGCGCGgaGCGUgggUCAGaGAGu -3'
miRNA:   3'- -GGGGCuuAGG-------UGCGU--UGCA---GGUC-CUC- -5'
33296 3' -55 NC_007605.1 + 159758 0.67 0.939084
Target:  5'- -aCCGAG-CCAUGCAGCGguugggccgaggCgAGGAGg -3'
miRNA:   3'- ggGGCUUaGGUGCGUUGCa-----------GgUCCUC- -5'
33296 3' -55 NC_007605.1 + 21785 0.67 0.935272
Target:  5'- gCCCGggUCucugUugGCAGaGUCCGGGcGa -3'
miRNA:   3'- gGGGCuuAG----GugCGUUgCAGGUCCuC- -5'
33296 3' -55 NC_007605.1 + 18716 0.67 0.935272
Target:  5'- gCCCGggUCucugUugGCAGaGUCCGGGcGa -3'
miRNA:   3'- gGGGCuuAG----GugCGUUgCAGGUCCuC- -5'
33296 3' -55 NC_007605.1 + 15647 0.67 0.935272
Target:  5'- gCCCGggUCucugUugGCAGaGUCCGGGcGa -3'
miRNA:   3'- gGGGCuuAG----GugCGUUgCAGGUCCuC- -5'
33296 3' -55 NC_007605.1 + 12578 0.67 0.935272
Target:  5'- gCCCGggUCucugUugGCAGaGUCCGGGcGa -3'
miRNA:   3'- gGGGCuuAG----GugCGUUgCAGGUCCuC- -5'
33296 3' -55 NC_007605.1 + 30991 0.67 0.935272
Target:  5'- gCCCGggUCucugUugGCAGaGUCCGGGcGa -3'
miRNA:   3'- gGGGCuuAG----GugCGUUgCAGGUCCuC- -5'
33296 3' -55 NC_007605.1 + 34060 0.67 0.935272
Target:  5'- gCCCGggUCucugUugGCAGaGUCCGGGcGa -3'
miRNA:   3'- gGGGCuuAG----GugCGUUgCAGGUCCuC- -5'
33296 3' -55 NC_007605.1 + 103687 0.67 0.935272
Target:  5'- uCCCUGAGUUCua-CAAUG-CCAGGGGg -3'
miRNA:   3'- -GGGGCUUAGGugcGUUGCaGGUCCUC- -5'
33296 3' -55 NC_007605.1 + 54229 0.67 0.935272
Target:  5'- -gCCGAgGUCCGgGCGcuggaagagcAgGUCCGGGAGa -3'
miRNA:   3'- ggGGCU-UAGGUgCGU----------UgCAGGUCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.