miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33296 5' -62.9 NC_007605.1 + 135741 0.66 0.653043
Target:  5'- gCgUCCUu-GGGUGGGGCGucCGGGCg- -3'
miRNA:   3'- aGgGGGGuuCCCACCCCGU--GCCUGac -5'
33296 5' -62.9 NC_007605.1 + 141885 0.66 0.623931
Target:  5'- -aCCCCCGccGGagcGGGGCAgCGGACc- -3'
miRNA:   3'- agGGGGGUucCCa--CCCCGU-GCCUGac -5'
33296 5' -62.9 NC_007605.1 + 39396 0.66 0.623931
Target:  5'- aCCCCCCAcccGGaGcGGGGCagcggcccaGCGGACc- -3'
miRNA:   3'- aGGGGGGUu--CC-CaCCCCG---------UGCCUGac -5'
33296 5' -62.9 NC_007605.1 + 39271 0.66 0.623931
Target:  5'- aCCCCCCAcccGGaGcGGGGCagcggcccaGCGGACc- -3'
miRNA:   3'- aGGGGGGUu--CC-CaCCCCG---------UGCCUGac -5'
33296 5' -62.9 NC_007605.1 + 39022 0.66 0.623931
Target:  5'- aCCCCCCAcccGGaGcGGGGCagcggcccaGCGGACc- -3'
miRNA:   3'- aGGGGGGUu--CC-CaCCCCG---------UGCCUGac -5'
33296 5' -62.9 NC_007605.1 + 38772 0.66 0.623931
Target:  5'- aCCCCCCAcccGGaGcGGGGCagcggcccaGCGGACc- -3'
miRNA:   3'- aGGGGGGUu--CC-CaCCCCG---------UGCCUGac -5'
33296 5' -62.9 NC_007605.1 + 38647 0.66 0.623931
Target:  5'- aCCCCCCAcccGGaGcGGGGCagcggcccaGCGGACc- -3'
miRNA:   3'- aGGGGGGUu--CC-CaCCCCG---------UGCCUGac -5'
33296 5' -62.9 NC_007605.1 + 153071 0.66 0.623931
Target:  5'- cCCCCUCAcuuuGGGUcuuagaauGGuGGC-CGGGCUGu -3'
miRNA:   3'- aGGGGGGUu---CCCA--------CC-CCGuGCCUGAC- -5'
33296 5' -62.9 NC_007605.1 + 133943 0.66 0.623931
Target:  5'- cUCUUCCCGugaggcAGGGagGGGGCGCugcuGGugUGa -3'
miRNA:   3'- -AGGGGGGU------UCCCa-CCCCGUG----CCugAC- -5'
33296 5' -62.9 NC_007605.1 + 39521 0.66 0.623931
Target:  5'- aCCCCCCAcccGGaGcGGGGCagcggcccaGCGGACc- -3'
miRNA:   3'- aGGGGGGUu--CC-CaCCCCG---------UGCCUGac -5'
33296 5' -62.9 NC_007605.1 + 39771 0.66 0.623931
Target:  5'- aCCCCCCAcccGGaGcGGGGCagcggcccaGCGGACc- -3'
miRNA:   3'- aGGGGGGUu--CC-CaCCCCG---------UGCCUGac -5'
33296 5' -62.9 NC_007605.1 + 39896 0.66 0.623931
Target:  5'- aCCCCCCAcccGGaGcGGGGCagcggcccaGCGGACc- -3'
miRNA:   3'- aGGGGGGUu--CC-CaCCCCG---------UGCCUGac -5'
33296 5' -62.9 NC_007605.1 + 39146 0.66 0.623931
Target:  5'- aCCCCCCAcccGGaGcGGGGCagcggcccaGCGGACc- -3'
miRNA:   3'- aGGGGGGUu--CC-CaCCCCG---------UGCCUGac -5'
33296 5' -62.9 NC_007605.1 + 39646 0.66 0.623931
Target:  5'- aCCCCCCAcccGGaGcGGGGCagcggcccaGCGGACc- -3'
miRNA:   3'- aGGGGGGUu--CC-CaCCCCG---------UGCCUGac -5'
33296 5' -62.9 NC_007605.1 + 38897 0.66 0.623931
Target:  5'- aCCCCCCAcccGGaGcGGGGCagcggcccaGCGGACc- -3'
miRNA:   3'- aGGGGGGUu--CC-CaCCCCG---------UGCCUGac -5'
33296 5' -62.9 NC_007605.1 + 38522 0.66 0.623931
Target:  5'- aCCCCCCAcccGGaGcGGGGCagcggcccaGCGGACc- -3'
miRNA:   3'- aGGGGGGUu--CC-CaCCCCG---------UGCCUGac -5'
33296 5' -62.9 NC_007605.1 + 127574 0.66 0.614229
Target:  5'- gUCCCagcgCCGAGGcaagaGUGGGGCuguggAUGGugUGg -3'
miRNA:   3'- -AGGGg---GGUUCC-----CACCCCG-----UGCCugAC- -5'
33296 5' -62.9 NC_007605.1 + 27749 0.66 0.60454
Target:  5'- --gCCCCGAGGaggcgcccggaGUGGGGC-CGGucgGCUGg -3'
miRNA:   3'- aggGGGGUUCC-----------CACCCCGuGCC---UGAC- -5'
33296 5' -62.9 NC_007605.1 + 24680 0.66 0.60454
Target:  5'- --gCCCCGAGGaggcgcccggaGUGGGGC-CGGucgGCUGg -3'
miRNA:   3'- aggGGGGUUCC-----------CACCCCGuGCC---UGAC- -5'
33296 5' -62.9 NC_007605.1 + 21611 0.66 0.60454
Target:  5'- --gCCCCGAGGaggcgcccggaGUGGGGC-CGGucgGCUGg -3'
miRNA:   3'- aggGGGGUUCC-----------CACCCCGuGCC---UGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.