miRNA display CGI


Results 21 - 40 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33297 3' -65.3 NC_007605.1 + 12386 0.66 0.530731
Target:  5'- -aGGGCCcCCCggcagCUGGCCccgaggagGCGCCCgGa -3'
miRNA:   3'- ggCUCGGcGGGa----GACCGG--------CGUGGGgC- -5'
33297 3' -65.3 NC_007605.1 + 25895 0.66 0.530731
Target:  5'- cCCGGGCCauccccGCCCccCUGuGUC-CACCCCa -3'
miRNA:   3'- -GGCUCGG------CGGGa-GAC-CGGcGUGGGGc -5'
33297 3' -65.3 NC_007605.1 + 28963 0.66 0.530731
Target:  5'- cCCGGGCCauccccGCCCccCUGuGUC-CACCCCa -3'
miRNA:   3'- -GGCUCGG------CGGGa-GAC-CGGcGUGGGGc -5'
33297 3' -65.3 NC_007605.1 + 35101 0.66 0.530731
Target:  5'- cCCGGGCCauccccGCCCccCUGuGUC-CACCCCa -3'
miRNA:   3'- -GGCUCGG------CGGGa-GAC-CGGcGUGGGGc -5'
33297 3' -65.3 NC_007605.1 + 52804 0.66 0.530731
Target:  5'- uCCGGccuacgcuGCCGCCUUcCUGG--GCGCCCCa -3'
miRNA:   3'- -GGCU--------CGGCGGGA-GACCggCGUGGGGc -5'
33297 3' -65.3 NC_007605.1 + 27731 0.66 0.530731
Target:  5'- -aGGGCCcCCCggcagCUGGCCccgaggagGCGCCCgGa -3'
miRNA:   3'- ggCUCGGcGGGa----GACCGG--------CGUGGGgC- -5'
33297 3' -65.3 NC_007605.1 + 33869 0.66 0.530731
Target:  5'- -aGGGCCcCCCggcagCUGGCCccgaggagGCGCCCgGa -3'
miRNA:   3'- ggCUCGGcGGGa----GACCGG--------CGUGGGgC- -5'
33297 3' -65.3 NC_007605.1 + 30800 0.66 0.530731
Target:  5'- -aGGGCCcCCCggcagCUGGCCccgaggagGCGCCCgGa -3'
miRNA:   3'- ggCUCGGcGGGa----GACCGG--------CGUGGGgC- -5'
33297 3' -65.3 NC_007605.1 + 24662 0.66 0.530731
Target:  5'- -aGGGCCcCCCggcagCUGGCCccgaggagGCGCCCgGa -3'
miRNA:   3'- ggCUCGGcGGGa----GACCGG--------CGUGGGgC- -5'
33297 3' -65.3 NC_007605.1 + 21593 0.66 0.530731
Target:  5'- -aGGGCCcCCCggcagCUGGCCccgaggagGCGCCCgGa -3'
miRNA:   3'- ggCUCGGcGGGa----GACCGG--------CGUGGGgC- -5'
33297 3' -65.3 NC_007605.1 + 15455 0.66 0.530731
Target:  5'- -aGGGCCcCCCggcagCUGGCCccgaggagGCGCCCgGa -3'
miRNA:   3'- ggCUCGGcGGGa----GACCGG--------CGUGGGgC- -5'
33297 3' -65.3 NC_007605.1 + 18524 0.66 0.530731
Target:  5'- -aGGGCCcCCCggcagCUGGCCccgaggagGCGCCCgGa -3'
miRNA:   3'- ggCUCGGcGGGa----GACCGG--------CGUGGGgC- -5'
33297 3' -65.3 NC_007605.1 + 22826 0.66 0.530731
Target:  5'- cCCGGGCCauccccGCCCccCUGuGUC-CACCCCa -3'
miRNA:   3'- -GGCUCGG------CGGGa-GAC-CGGcGUGGGGc -5'
33297 3' -65.3 NC_007605.1 + 13619 0.66 0.530731
Target:  5'- cCCGGGCCauccccGCCCccCUGuGUC-CACCCCa -3'
miRNA:   3'- -GGCUCGG------CGGGa-GAC-CGGcGUGGGGc -5'
33297 3' -65.3 NC_007605.1 + 154158 0.66 0.52162
Target:  5'- gCGGGCCaagGCCUUCguggaGGCCcugaGCCCCGc -3'
miRNA:   3'- gGCUCGG---CGGGAGa----CCGGcg--UGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 72489 0.66 0.52162
Target:  5'- cCUGGGUCaGCUCcugcaUCUGGCCcucgcucaugaGCACCCUGg -3'
miRNA:   3'- -GGCUCGG-CGGG-----AGACCGG-----------CGUGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 160467 0.66 0.52162
Target:  5'- gCUGGGCCGCUUUCgGGgCGUAagUCCCa -3'
miRNA:   3'- -GGCUCGGCGGGAGaCCgGCGU--GGGGc -5'
33297 3' -65.3 NC_007605.1 + 68686 0.67 0.512571
Target:  5'- -gGAGUCcuguGCCCagUGGuuGCACCCgGg -3'
miRNA:   3'- ggCUCGG----CGGGagACCggCGUGGGgC- -5'
33297 3' -65.3 NC_007605.1 + 153223 0.67 0.512571
Target:  5'- gCCGuGCCGCUCggCguaGGCCGgGuCCUCGg -3'
miRNA:   3'- -GGCuCGGCGGGa-Ga--CCGGCgU-GGGGC- -5'
33297 3' -65.3 NC_007605.1 + 159496 0.67 0.512571
Target:  5'- gCCGGGCUcucguGCCCcagCcGGCCgggGCACCuCCGg -3'
miRNA:   3'- -GGCUCGG-----CGGGa--GaCCGG---CGUGG-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.