miRNA display CGI


Results 21 - 40 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33297 5' -52.5 NC_007605.1 + 34759 0.74 0.71336
Target:  5'- uGGCCUccccgGGUCCACcaggccAGCCGGAGggacccCGGCa -3'
miRNA:   3'- -CCGGA-----CCAGGUG------UUGGUUUCau----GCCG- -5'
33297 5' -52.5 NC_007605.1 + 31690 0.74 0.71336
Target:  5'- uGGCCUccccgGGUCCACcaggccAGCCGGAGggacccCGGCa -3'
miRNA:   3'- -CCGGA-----CCAGGUG------UUGGUUUCau----GCCG- -5'
33297 5' -52.5 NC_007605.1 + 28621 0.74 0.71336
Target:  5'- uGGCCUccccgGGUCCACcaggccAGCCGGAGggacccCGGCa -3'
miRNA:   3'- -CCGGA-----CCAGGUG------UUGGUUUCau----GCCG- -5'
33297 5' -52.5 NC_007605.1 + 22483 0.74 0.71336
Target:  5'- uGGCCUccccgGGUCCACcaggccAGCCGGAGggacccCGGCa -3'
miRNA:   3'- -CCGGA-----CCAGGUG------UUGGUUUCau----GCCG- -5'
33297 5' -52.5 NC_007605.1 + 16345 0.74 0.71336
Target:  5'- uGGCCUccccgGGUCCACcaggccAGCCGGAGggacccCGGCa -3'
miRNA:   3'- -CCGGA-----CCAGGUG------UUGGUUUCau----GCCG- -5'
33297 5' -52.5 NC_007605.1 + 19414 0.74 0.71336
Target:  5'- uGGCCUccccgGGUCCACcaggccAGCCGGAGggacccCGGCa -3'
miRNA:   3'- -CCGGA-----CCAGGUG------UUGGUUUCau----GCCG- -5'
33297 5' -52.5 NC_007605.1 + 13276 0.74 0.71336
Target:  5'- uGGCCUccccgGGUCCACcaggccAGCCGGAGggacccCGGCa -3'
miRNA:   3'- -CCGGA-----CCAGGUG------UUGGUUUCau----GCCG- -5'
33297 5' -52.5 NC_007605.1 + 25552 0.74 0.71336
Target:  5'- uGGCCUccccgGGUCCACcaggccAGCCGGAGggacccCGGCa -3'
miRNA:   3'- -CCGGA-----CCAGGUG------UUGGUUUCau----GCCG- -5'
33297 5' -52.5 NC_007605.1 + 43806 0.73 0.8
Target:  5'- aGGCgUccccuacuaGGUCCACGGCCAgcucguAGGUGgGGCc -3'
miRNA:   3'- -CCGgA---------CCAGGUGUUGGU------UUCAUgCCG- -5'
33297 5' -52.5 NC_007605.1 + 45399 0.73 0.781596
Target:  5'- uGGcCCUGG-CCAUcaccaGACCGGAGgcUGGCg -3'
miRNA:   3'- -CC-GGACCaGGUG-----UUGGUUUCauGCCG- -5'
33297 5' -52.5 NC_007605.1 + 120087 0.73 0.762644
Target:  5'- uGGCgUGGUCCACGAgCGgcGUGucuUGGCc -3'
miRNA:   3'- -CCGgACCAGGUGUUgGUuuCAU---GCCG- -5'
33297 5' -52.5 NC_007605.1 + 153974 0.73 0.762644
Target:  5'- aGGCCUuGGcCCGCu-CCAAcaucGUGCGGCc -3'
miRNA:   3'- -CCGGA-CCaGGUGuuGGUUu---CAUGCCG- -5'
33297 5' -52.5 NC_007605.1 + 56320 0.73 0.772183
Target:  5'- uGUCUGG-CCACGGCCGuucggGCGGCc -3'
miRNA:   3'- cCGGACCaGGUGUUGGUuuca-UGCCG- -5'
33297 5' -52.5 NC_007605.1 + 101414 0.73 0.772183
Target:  5'- uGGCCaGGUcCCGCcGCUGGAGUuccucuaggGCGGCg -3'
miRNA:   3'- -CCGGaCCA-GGUGuUGGUUUCA---------UGCCG- -5'
33297 5' -52.5 NC_007605.1 + 120405 0.72 0.851219
Target:  5'- cGCCUGGUCCGaGGCCuuauc-CGGCa -3'
miRNA:   3'- cCGGACCAGGUgUUGGuuucauGCCG- -5'
33297 5' -52.5 NC_007605.1 + 98324 0.72 0.805403
Target:  5'- uGGCCUGaGUCCGCAGgCGucGgacacaggcaauaACGGCa -3'
miRNA:   3'- -CCGGAC-CAGGUGUUgGUuuCa------------UGCCG- -5'
33297 5' -52.5 NC_007605.1 + 46811 0.72 0.817784
Target:  5'- cGGCCUGG-CCACcACCcuGAGGUGCuuuuuGCa -3'
miRNA:   3'- -CCGGACCaGGUGuUGG--UUUCAUGc----CG- -5'
33297 5' -52.5 NC_007605.1 + 49677 0.72 0.817784
Target:  5'- aGGCCccGGUCC-CAGCgGA--UGCGGCg -3'
miRNA:   3'- -CCGGa-CCAGGuGUUGgUUucAUGCCG- -5'
33297 5' -52.5 NC_007605.1 + 170637 0.71 0.866749
Target:  5'- gGGUCggGGUCCGCGGgcuCCGGGGcUGCGGg -3'
miRNA:   3'- -CCGGa-CCAGGUGUU---GGUUUC-AUGCCg -5'
33297 5' -52.5 NC_007605.1 + 40041 0.71 0.859089
Target:  5'- uGCCUGGUCCugGAgcucauCCGGGGaUGCuGCa -3'
miRNA:   3'- cCGGACCAGGugUU------GGUUUC-AUGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.