miRNA display CGI


Results 21 - 40 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33297 5' -52.5 NC_007605.1 + 14284 0.66 0.988083
Target:  5'- aGGCCUaGGUCCGCcAUUA---UGCGcGCg -3'
miRNA:   3'- -CCGGA-CCAGGUGuUGGUuucAUGC-CG- -5'
33297 5' -52.5 NC_007605.1 + 17353 0.66 0.988083
Target:  5'- aGGCCUaGGUCCGCcAUUA---UGCGcGCg -3'
miRNA:   3'- -CCGGA-CCAGGUGuUGGUuucAUGC-CG- -5'
33297 5' -52.5 NC_007605.1 + 29629 0.66 0.988083
Target:  5'- aGGCCUaGGUCCGCcAUUA---UGCGcGCg -3'
miRNA:   3'- -CCGGA-CCAGGUGuUGGUuucAUGC-CG- -5'
33297 5' -52.5 NC_007605.1 + 32698 0.66 0.988083
Target:  5'- aGGCCUaGGUCCGCcAUUA---UGCGcGCg -3'
miRNA:   3'- -CCGGA-CCAGGUGuUGGUuucAUGC-CG- -5'
33297 5' -52.5 NC_007605.1 + 20422 0.66 0.988083
Target:  5'- aGGCCUaGGUCCGCcAUUA---UGCGcGCg -3'
miRNA:   3'- -CCGGA-CCAGGUGuUGGUuucAUGC-CG- -5'
33297 5' -52.5 NC_007605.1 + 159921 0.66 0.988083
Target:  5'- cGCCgUGGcucCCGgGGCCAcGGaGCGGCu -3'
miRNA:   3'- cCGG-ACCa--GGUgUUGGUuUCaUGCCG- -5'
33297 5' -52.5 NC_007605.1 + 26560 0.66 0.988083
Target:  5'- aGGCCUaGGUCCGCcAUUA---UGCGcGCg -3'
miRNA:   3'- -CCGGA-CCAGGUGuUGGUuucAUGC-CG- -5'
33297 5' -52.5 NC_007605.1 + 165111 0.66 0.986526
Target:  5'- aGCCUGGcCgGCGGCCAcacAGga-GGCc -3'
miRNA:   3'- cCGGACCaGgUGUUGGUu--UCaugCCG- -5'
33297 5' -52.5 NC_007605.1 + 68400 0.66 0.986526
Target:  5'- aGCCuUGG-CCACAggGCCAGugaaggccucGUAUGGCc -3'
miRNA:   3'- cCGG-ACCaGGUGU--UGGUUu---------CAUGCCG- -5'
33297 5' -52.5 NC_007605.1 + 101771 0.66 0.986526
Target:  5'- uGCCUGGUcacgggagCCACAACCGug--GCcGCa -3'
miRNA:   3'- cCGGACCA--------GGUGUUGGUuucaUGcCG- -5'
33297 5' -52.5 NC_007605.1 + 39302 0.66 0.986526
Target:  5'- cGGCCgccggugGGUCCGCuggGCCGcugccccgcuccGGGUGgGGg -3'
miRNA:   3'- -CCGGa------CCAGGUGu--UGGU------------UUCAUgCCg -5'
33297 5' -52.5 NC_007605.1 + 38428 0.66 0.986526
Target:  5'- cGGCCgccggugGGUCCGCuggGCCGcugccccgcuccGGGUGgGGg -3'
miRNA:   3'- -CCGGa------CCAGGUGu--UGGU------------UUCAUgCCg -5'
33297 5' -52.5 NC_007605.1 + 38927 0.66 0.986526
Target:  5'- cGGCCgccggugGGUCCGCuggGCCGcugccccgcuccGGGUGgGGg -3'
miRNA:   3'- -CCGGa------CCAGGUGu--UGGU------------UUCAUgCCg -5'
33297 5' -52.5 NC_007605.1 + 39427 0.66 0.986526
Target:  5'- cGGCCgccggugGGUCCGCuggGCCGcugccccgcuccGGGUGgGGg -3'
miRNA:   3'- -CCGGa------CCAGGUGu--UGGU------------UUCAUgCCg -5'
33297 5' -52.5 NC_007605.1 + 39677 0.66 0.986526
Target:  5'- cGGCCgccggugGGUCCGCuggGCCGcugccccgcuccGGGUGgGGg -3'
miRNA:   3'- -CCGGa------CCAGGUGu--UGGU------------UUCAUgCCg -5'
33297 5' -52.5 NC_007605.1 + 126042 0.66 0.986526
Target:  5'- cGCUgcGGUCCAgaAGCCAGGG-AgGGCa -3'
miRNA:   3'- cCGGa-CCAGGUg-UUGGUUUCaUgCCG- -5'
33297 5' -52.5 NC_007605.1 + 39552 0.66 0.986526
Target:  5'- cGGCCgccggugGGUCCGCuggGCCGcugccccgcuccGGGUGgGGg -3'
miRNA:   3'- -CCGGa------CCAGGUGu--UGGU------------UUCAUgCCg -5'
33297 5' -52.5 NC_007605.1 + 38678 0.66 0.986526
Target:  5'- cGGCCgccggugGGUCCGCuggGCCGcugccccgcuccGGGUGgGGg -3'
miRNA:   3'- -CCGGa------CCAGGUGu--UGGU------------UUCAUgCCg -5'
33297 5' -52.5 NC_007605.1 + 38803 0.66 0.986526
Target:  5'- cGGCCgccggugGGUCCGCuggGCCGcugccccgcuccGGGUGgGGg -3'
miRNA:   3'- -CCGGa------CCAGGUGu--UGGU------------UUCAUgCCg -5'
33297 5' -52.5 NC_007605.1 + 38553 0.66 0.986526
Target:  5'- cGGCCgccggugGGUCCGCuggGCCGcugccccgcuccGGGUGgGGg -3'
miRNA:   3'- -CCGGa------CCAGGUGu--UGGU------------UUCAUgCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.