miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33298 3' -52.6 NC_007605.1 + 101568 0.66 0.982193
Target:  5'- uGCGGCCaCgGUUGUGGCUcccGUGAC-Ca -3'
miRNA:   3'- cUGUUGG-GgUAACACCGG---UACUGuGa -5'
33298 3' -52.6 NC_007605.1 + 127547 0.66 0.977727
Target:  5'- gGACAGCUgacg-GUGGgCAUGACACa -3'
miRNA:   3'- -CUGUUGGgguaaCACCgGUACUGUGa -5'
33298 3' -52.6 NC_007605.1 + 114539 0.66 0.976992
Target:  5'- aGGCAGCaccaaaaaugccugCCCGUccgaugugGUGGCCAggugGACGCa -3'
miRNA:   3'- -CUGUUG--------------GGGUAa-------CACCGGUa---CUGUGa -5'
33298 3' -52.6 NC_007605.1 + 80579 0.66 0.975208
Target:  5'- cGACGAUCUCuaaUGgccugucgaaUGGCCAUGGCAUa -3'
miRNA:   3'- -CUGUUGGGGua-AC----------ACCGGUACUGUGa -5'
33298 3' -52.6 NC_007605.1 + 69783 0.66 0.972486
Target:  5'- cACAACagaugucagggUgCAgaggGUGGCCAUGACACa -3'
miRNA:   3'- cUGUUG-----------GgGUaa--CACCGGUACUGUGa -5'
33298 3' -52.6 NC_007605.1 + 50401 0.66 0.972486
Target:  5'- aGC-GCCCCc--GUGGCCuuUGGCACg -3'
miRNA:   3'- cUGuUGGGGuaaCACCGGu-ACUGUGa -5'
33298 3' -52.6 NC_007605.1 + 56207 0.67 0.969555
Target:  5'- gGACGGCCaCGUUGUGGaCAaaggggGGCACUg -3'
miRNA:   3'- -CUGUUGGgGUAACACCgGUa-----CUGUGA- -5'
33298 3' -52.6 NC_007605.1 + 110548 0.67 0.969555
Target:  5'- --uGACCCCucggcgUGUGGCCccgugggGGCGCa -3'
miRNA:   3'- cugUUGGGGua----ACACCGGua-----CUGUGa -5'
33298 3' -52.6 NC_007605.1 + 124104 0.67 0.955605
Target:  5'- gGGCAACCaCGcgGUGGCCGUGGaaaGCc -3'
miRNA:   3'- -CUGUUGGgGUaaCACCGGUACUg--UGa -5'
33298 3' -52.6 NC_007605.1 + 155472 0.68 0.951533
Target:  5'- uGCAGCCac---GUGGCCAcgUGACACa -3'
miRNA:   3'- cUGUUGGgguaaCACCGGU--ACUGUGa -5'
33298 3' -52.6 NC_007605.1 + 162405 0.68 0.946326
Target:  5'- uGACAACCCCGggcuUGGCCAgagccccccagaGugGCUa -3'
miRNA:   3'- -CUGUUGGGGUaac-ACCGGUa-----------CugUGA- -5'
33298 3' -52.6 NC_007605.1 + 122118 0.68 0.937848
Target:  5'- aGAUccaCCCAgggGUGGCCAUGAC-Cg -3'
miRNA:   3'- -CUGuugGGGUaa-CACCGGUACUGuGa -5'
33298 3' -52.6 NC_007605.1 + 127265 0.68 0.930694
Target:  5'- aGACAGCCCCcauccacuGCCGUGAUGCUc -3'
miRNA:   3'- -CUGUUGGGGuaacac--CGGUACUGUGA- -5'
33298 3' -52.6 NC_007605.1 + 118812 0.69 0.921912
Target:  5'- aGGCAGgCgCUGUUaUGGCCAUGAUACUc -3'
miRNA:   3'- -CUGUUgG-GGUAAcACCGGUACUGUGA- -5'
33298 3' -52.6 NC_007605.1 + 2311 0.69 0.903066
Target:  5'- aGAgGGCCCUucugGUGGCCGggccagagaccgcUGACACg -3'
miRNA:   3'- -CUgUUGGGGuaa-CACCGGU-------------ACUGUGa -5'
33298 3' -52.6 NC_007605.1 + 137080 0.69 0.897148
Target:  5'- -cCGACUCCggUGUGGCCGUagGACAg- -3'
miRNA:   3'- cuGUUGGGGuaACACCGGUA--CUGUga -5'
33298 3' -52.6 NC_007605.1 + 155196 0.7 0.890342
Target:  5'- -uCAGCCUCGUUgGUGGCCGUGGgGa- -3'
miRNA:   3'- cuGUUGGGGUAA-CACCGGUACUgUga -5'
33298 3' -52.6 NC_007605.1 + 101217 0.7 0.868503
Target:  5'- gGGCAACCCCAg---GGCCGcGAC-CUa -3'
miRNA:   3'- -CUGUUGGGGUaacaCCGGUaCUGuGA- -5'
33298 3' -52.6 NC_007605.1 + 159420 0.7 0.868503
Target:  5'- uGGCcaGACCCUcg-GUGGCCAccUGGCGCa -3'
miRNA:   3'- -CUG--UUGGGGuaaCACCGGU--ACUGUGa -5'
33298 3' -52.6 NC_007605.1 + 125033 0.72 0.782264
Target:  5'- cACAcCCUCAuUUGaGGCCAUGACACa -3'
miRNA:   3'- cUGUuGGGGU-AACaCCGGUACUGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.