miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33298 5' -50.7 NC_007605.1 + 137294 0.66 0.995885
Target:  5'- cCCGGcugCUCc-CGCCUC-AGGGAUCGu -3'
miRNA:   3'- -GGUCa--GAGuaGCGGAGaUCCUUAGUg -5'
33298 5' -50.7 NC_007605.1 + 57905 0.66 0.995885
Target:  5'- gCCAGUCUCAacuaUCGCUcCUuc-AGUCACu -3'
miRNA:   3'- -GGUCAGAGU----AGCGGaGAuccUUAGUG- -5'
33298 5' -50.7 NC_007605.1 + 87984 0.66 0.995482
Target:  5'- cCCAGUCcaccggccguaaaccUCAgUGCUUCUGGGAAaUGCg -3'
miRNA:   3'- -GGUCAG---------------AGUaGCGGAGAUCCUUaGUG- -5'
33298 5' -50.7 NC_007605.1 + 133289 0.66 0.995196
Target:  5'- gCCAG-CUCGagCGCUUCgGGGGA-CACg -3'
miRNA:   3'- -GGUCaGAGUa-GCGGAGaUCCUUaGUG- -5'
33298 5' -50.7 NC_007605.1 + 89184 0.66 0.994416
Target:  5'- gUCAGUCUgcuUcgCGuCCUUUGGGAA-CACg -3'
miRNA:   3'- -GGUCAGA---GuaGC-GGAGAUCCUUaGUG- -5'
33298 5' -50.7 NC_007605.1 + 4652 0.67 0.992549
Target:  5'- gCCAGUCgcugCGCCUgcugCUGGGAaccugGUCAUc -3'
miRNA:   3'- -GGUCAGaguaGCGGA----GAUCCU-----UAGUG- -5'
33298 5' -50.7 NC_007605.1 + 110666 0.67 0.991445
Target:  5'- gCCGGcagCUCuAUCGCCUCUauugccagaGGGAAcCAUu -3'
miRNA:   3'- -GGUCa--GAG-UAGCGGAGA---------UCCUUaGUG- -5'
33298 5' -50.7 NC_007605.1 + 28804 0.67 0.988853
Target:  5'- cCCAGUCUC--UGCCUCcAGGcAAgggCGCc -3'
miRNA:   3'- -GGUCAGAGuaGCGGAGaUCC-UUa--GUG- -5'
33298 5' -50.7 NC_007605.1 + 31873 0.67 0.988853
Target:  5'- cCCAGUCUC--UGCCUCcAGGcAAgggCGCc -3'
miRNA:   3'- -GGUCAGAGuaGCGGAGaUCC-UUa--GUG- -5'
33298 5' -50.7 NC_007605.1 + 34941 0.67 0.988853
Target:  5'- cCCAGUCUC--UGCCUCcAGGcAAgggCGCc -3'
miRNA:   3'- -GGUCAGAGuaGCGGAGaUCC-UUa--GUG- -5'
33298 5' -50.7 NC_007605.1 + 25735 0.67 0.988853
Target:  5'- cCCAGUCUC--UGCCUCcAGGcAAgggCGCc -3'
miRNA:   3'- -GGUCAGAGuaGCGGAGaUCC-UUa--GUG- -5'
33298 5' -50.7 NC_007605.1 + 22666 0.67 0.988853
Target:  5'- cCCAGUCUC--UGCCUCcAGGcAAgggCGCc -3'
miRNA:   3'- -GGUCAGAGuaGCGGAGaUCC-UUa--GUG- -5'
33298 5' -50.7 NC_007605.1 + 13459 0.67 0.988853
Target:  5'- cCCAGUCUC--UGCCUCcAGGcAAgggCGCc -3'
miRNA:   3'- -GGUCAGAGuaGCGGAGaUCC-UUa--GUG- -5'
33298 5' -50.7 NC_007605.1 + 16528 0.67 0.988853
Target:  5'- cCCAGUCUC--UGCCUCcAGGcAAgggCGCc -3'
miRNA:   3'- -GGUCAGAGuaGCGGAGaUCC-UUa--GUG- -5'
33298 5' -50.7 NC_007605.1 + 19597 0.67 0.988853
Target:  5'- cCCAGUCUC--UGCCUCcAGGcAAgggCGCc -3'
miRNA:   3'- -GGUCAGAGuaGCGGAGaUCC-UUa--GUG- -5'
33298 5' -50.7 NC_007605.1 + 48193 0.68 0.979707
Target:  5'- cCCAGUCUCA-CGCCagcgagCUcgauccccGGGAGauUCGCg -3'
miRNA:   3'- -GGUCAGAGUaGCGGa-----GA--------UCCUU--AGUG- -5'
33298 5' -50.7 NC_007605.1 + 168678 0.71 0.931934
Target:  5'- cCCAGUCacccuccugcUCAUCGCuCUCU-GGAAUuugCACg -3'
miRNA:   3'- -GGUCAG----------AGUAGCG-GAGAuCCUUA---GUG- -5'
33298 5' -50.7 NC_007605.1 + 52914 1.11 0.007611
Target:  5'- gCCAGUCUCAUCGCCUCUAGGAAUCACc -3'
miRNA:   3'- -GGUCAGAGUAGCGGAGAUCCUUAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.