Results 41 - 56 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33299 | 3' | -58 | NC_007605.1 | + | 169517 | 0.68 | 0.770238 |
Target: 5'- -uUC-CCCcGCGGCCCCCc-AGCCCc -3' miRNA: 3'- ucAGaGGGaCGCUGGGGGaaUUGGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 170054 | 0.68 | 0.770238 |
Target: 5'- -uUC-CCCcGCGGCCCCCc-AGCCCc -3' miRNA: 3'- ucAGaGGGaCGCUGGGGGaaUUGGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 170577 | 0.68 | 0.770238 |
Target: 5'- -uUC-CCCcGCGGCCCCCc-AGCCCc -3' miRNA: 3'- ucAGaGGGaCGCUGGGGGaaUUGGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 171114 | 0.68 | 0.770238 |
Target: 5'- -uUC-CCCcGCGGCCCCCc-AGCCCc -3' miRNA: 3'- ucAGaGGGaCGCUGGGGGaaUUGGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 123285 | 0.69 | 0.713362 |
Target: 5'- cGGUCUCaaaCUGCuGCCCCCgg-GCCUc -3' miRNA: 3'- -UCAGAGg--GACGcUGGGGGaauUGGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 82552 | 0.69 | 0.703602 |
Target: 5'- cAGg--CCCUGCccucaGGCCCCCgagUGGCCUGu -3' miRNA: 3'- -UCagaGGGACG-----CUGGGGGa--AUUGGGC- -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 97176 | 0.7 | 0.644124 |
Target: 5'- cGUCUCCCcuuUGgaaUGGCCCCUg-GACCCGg -3' miRNA: 3'- uCAGAGGG---AC---GCUGGGGGaaUUGGGC- -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 103022 | 0.71 | 0.594229 |
Target: 5'- gAGUCUCagCUGCaGGCCuCCCUggguCCCGg -3' miRNA: 3'- -UCAGAGg-GACG-CUGG-GGGAauu-GGGC- -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 92057 | 0.72 | 0.544984 |
Target: 5'- aAGUCUCCCgagccCGACcaugCCCCUgaaGCCCGg -3' miRNA: 3'- -UCAGAGGGac---GCUG----GGGGAau-UGGGC- -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 50861 | 0.72 | 0.522759 |
Target: 5'- cGcCUCCCcacggccgucgggcUGCGACCCCgUgcGCCCGu -3' miRNA: 3'- uCaGAGGG--------------ACGCUGGGGgAauUGGGC- -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 61167 | 0.72 | 0.522759 |
Target: 5'- uGGUCUCCUUcggcaGCGACCuggCCCUcccuucccccgagcUGACCCGg -3' miRNA: 3'- -UCAGAGGGA-----CGCUGG---GGGA--------------AUUGGGC- -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 100862 | 0.76 | 0.329208 |
Target: 5'- aGGUCUUCCU-CGAUCCCCU-GGCCCa -3' miRNA: 3'- -UCAGAGGGAcGCUGGGGGAaUUGGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 157308 | 0.78 | 0.256335 |
Target: 5'- cAGUCUCCCagUGCGugCCCgUUAACCa- -3' miRNA: 3'- -UCAGAGGG--ACGCugGGGgAAUUGGgc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 109304 | 0.78 | 0.244598 |
Target: 5'- aAGUCUCCCUGUGACUCCacaUUGACgCa -3' miRNA: 3'- -UCAGAGGGACGCUGGGGg--AAUUGgGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 53552 | 0.78 | 0.262375 |
Target: 5'- cGGUCUCCUUGC--CCCCCgcGACCCGc -3' miRNA: 3'- -UCAGAGGGACGcuGGGGGaaUUGGGC- -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 53294 | 1.09 | 0.002109 |
Target: 5'- gAGUCUCCCUGCGACCCCCUUAACCCGg -3' miRNA: 3'- -UCAGAGGGACGCUGGGGGAAUUGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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