miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33299 3' -58 NC_007605.1 + 169517 0.68 0.770238
Target:  5'- -uUC-CCCcGCGGCCCCCc-AGCCCc -3'
miRNA:   3'- ucAGaGGGaCGCUGGGGGaaUUGGGc -5'
33299 3' -58 NC_007605.1 + 58355 0.68 0.761002
Target:  5'- cGUCUCCggccuCUGCGGCCCCggccuCUgcggcCCCGg -3'
miRNA:   3'- uCAGAGG-----GACGCUGGGG-----GAauu--GGGC- -5'
33299 3' -58 NC_007605.1 + 170577 0.68 0.770238
Target:  5'- -uUC-CCCcGCGGCCCCCc-AGCCCc -3'
miRNA:   3'- ucAGaGGGaCGCUGGGGGaaUUGGGc -5'
33299 3' -58 NC_007605.1 + 171114 0.68 0.770238
Target:  5'- -uUC-CCCcGCGGCCCCCc-AGCCCc -3'
miRNA:   3'- ucAGaGGGaCGCUGGGGGaaUUGGGc -5'
33299 3' -58 NC_007605.1 + 95028 0.67 0.805925
Target:  5'- cGUUUCCCUGaCGGCCUCaggGGCCa- -3'
miRNA:   3'- uCAGAGGGAC-GCUGGGGgaaUUGGgc -5'
33299 3' -58 NC_007605.1 + 17485 0.67 0.814491
Target:  5'- -cUCUCCCUaGCccuccGCCCCCUccaagGACUCGg -3'
miRNA:   3'- ucAGAGGGA-CGc----UGGGGGAa----UUGGGC- -5'
33299 3' -58 NC_007605.1 + 29761 0.67 0.814491
Target:  5'- -cUCUCCCUaGCccuccGCCCCCUccaagGACUCGg -3'
miRNA:   3'- ucAGAGGGA-CGc----UGGGGGAa----UUGGGC- -5'
33299 3' -58 NC_007605.1 + 31010 0.67 0.830326
Target:  5'- gAGUCcgggcgaUCCuCUGaGACCCUCcgGGCCCGg -3'
miRNA:   3'- -UCAG-------AGG-GACgCUGGGGGaaUUGGGC- -5'
33299 3' -58 NC_007605.1 + 24873 0.67 0.830326
Target:  5'- gAGUCcgggcgaUCCuCUGaGACCCUCcgGGCCCGg -3'
miRNA:   3'- -UCAG-------AGG-GACgCUGGGGGaaUUGGGC- -5'
33299 3' -58 NC_007605.1 + 21804 0.67 0.830326
Target:  5'- gAGUCcgggcgaUCCuCUGaGACCCUCcgGGCCCGg -3'
miRNA:   3'- -UCAG-------AGG-GACgCUGGGGGaaUUGGGC- -5'
33299 3' -58 NC_007605.1 + 20554 0.67 0.814491
Target:  5'- -cUCUCCCUaGCccuccGCCCCCUccaagGACUCGg -3'
miRNA:   3'- ucAGAGGGA-CGc----UGGGGGAa----UUGGGC- -5'
33299 3' -58 NC_007605.1 + 23623 0.67 0.814491
Target:  5'- -cUCUCCCUaGCccuccGCCCCCUccaagGACUCGg -3'
miRNA:   3'- ucAGAGGGA-CGc----UGGGGGAa----UUGGGC- -5'
33299 3' -58 NC_007605.1 + 26692 0.67 0.814491
Target:  5'- -cUCUCCCUaGCccuccGCCCCCUccaagGACUCGg -3'
miRNA:   3'- ucAGAGGGA-CGc----UGGGGGAa----UUGGGC- -5'
33299 3' -58 NC_007605.1 + 15666 0.67 0.830326
Target:  5'- gAGUCcgggcgaUCCuCUGaGACCCUCcgGGCCCGg -3'
miRNA:   3'- -UCAG-------AGG-GACgCUGGGGGaaUUGGGC- -5'
33299 3' -58 NC_007605.1 + 32830 0.67 0.814491
Target:  5'- -cUCUCCCUaGCccuccGCCCCCUccaagGACUCGg -3'
miRNA:   3'- ucAGAGGGA-CGc----UGGGGGAa----UUGGGC- -5'
33299 3' -58 NC_007605.1 + 39817 0.67 0.814491
Target:  5'- uGGUC-CCCUG-GACCCCa---GCCCc -3'
miRNA:   3'- -UCAGaGGGACgCUGGGGgaauUGGGc -5'
33299 3' -58 NC_007605.1 + 37148 0.67 0.814491
Target:  5'- uGGcCaCCCaucUGCGACCCCCcgcAACCCu -3'
miRNA:   3'- -UCaGaGGG---ACGCUGGGGGaa-UUGGGc -5'
33299 3' -58 NC_007605.1 + 12597 0.67 0.830326
Target:  5'- gAGUCcgggcgaUCCuCUGaGACCCUCcgGGCCCGg -3'
miRNA:   3'- -UCAG-------AGG-GACgCUGGGGGaaUUGGGC- -5'
33299 3' -58 NC_007605.1 + 18735 0.67 0.830326
Target:  5'- gAGUCcgggcgaUCCuCUGaGACCCUCcgGGCCCGg -3'
miRNA:   3'- -UCAG-------AGG-GACgCUGGGGGaaUUGGGC- -5'
33299 3' -58 NC_007605.1 + 34079 0.67 0.830326
Target:  5'- gAGUCcgggcgaUCCuCUGaGACCCUCcgGGCCCGg -3'
miRNA:   3'- -UCAG-------AGG-GACgCUGGGGGaaUUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.