Results 41 - 56 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33299 | 3' | -58 | NC_007605.1 | + | 15666 | 0.67 | 0.830326 |
Target: 5'- gAGUCcgggcgaUCCuCUGaGACCCUCcgGGCCCGg -3' miRNA: 3'- -UCAG-------AGG-GACgCUGGGGGaaUUGGGC- -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 18735 | 0.67 | 0.830326 |
Target: 5'- gAGUCcgggcgaUCCuCUGaGACCCUCcgGGCCCGg -3' miRNA: 3'- -UCAG-------AGG-GACgCUGGGGGaaUUGGGC- -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 21804 | 0.67 | 0.830326 |
Target: 5'- gAGUCcgggcgaUCCuCUGaGACCCUCcgGGCCCGg -3' miRNA: 3'- -UCAG-------AGG-GACgCUGGGGGaaUUGGGC- -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 34079 | 0.67 | 0.830326 |
Target: 5'- gAGUCcgggcgaUCCuCUGaGACCCUCcgGGCCCGg -3' miRNA: 3'- -UCAG-------AGG-GACgCUGGGGGaaUUGGGC- -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 43565 | 0.67 | 0.831143 |
Target: 5'- aGGUUUCCCccaUGCuuCCaCCCgUUAACCCa -3' miRNA: 3'- -UCAGAGGG---ACGcuGG-GGG-AAUUGGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 71323 | 0.67 | 0.831143 |
Target: 5'- uGUCaCCUUGCccaGCCCCCUggccucucUGACCCu -3' miRNA: 3'- uCAGaGGGACGc--UGGGGGA--------AUUGGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 159990 | 0.66 | 0.839214 |
Target: 5'- -cUCUgCCUcCGGCCgCCCcgGGCCCGg -3' miRNA: 3'- ucAGAgGGAcGCUGG-GGGaaUUGGGC- -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 88729 | 0.66 | 0.839214 |
Target: 5'- uGGUg-CCCUGgGAUCCCaugGACCCu -3' miRNA: 3'- -UCAgaGGGACgCUGGGGgaaUUGGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 108298 | 0.66 | 0.847105 |
Target: 5'- gGGcCUCCCaccaccguuaUGCcuCCCCCUUuACCCa -3' miRNA: 3'- -UCaGAGGG----------ACGcuGGGGGAAuUGGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 109644 | 0.66 | 0.862323 |
Target: 5'- cAGUC-CUCUGCucgucgguGGCCUCCUgUAGCCCc -3' miRNA: 3'- -UCAGaGGGACG--------CUGGGGGA-AUUGGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 75878 | 0.66 | 0.869639 |
Target: 5'- cGUCUCUUUGCcaaaggaccuGGCCCUCUUccCCCa -3' miRNA: 3'- uCAGAGGGACG----------CUGGGGGAAuuGGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 3373 | 0.66 | 0.869639 |
Target: 5'- aGGUCccguggCCCUGgcCGGCCCCauuucuccgAGCCCGu -3' miRNA: 3'- -UCAGa-----GGGAC--GCUGGGGgaa------UUGGGC- -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 100740 | 0.66 | 0.869639 |
Target: 5'- cGGUUcCCCgcGCGGCacgCCCCU--GCCCGg -3' miRNA: 3'- -UCAGaGGGa-CGCUG---GGGGAauUGGGC- -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 152953 | 0.66 | 0.869639 |
Target: 5'- cGcCUCCCaUGCuaagGGCCCCCUUccuuuCCCu -3' miRNA: 3'- uCaGAGGG-ACG----CUGGGGGAAuu---GGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 154665 | 0.66 | 0.869639 |
Target: 5'- gAGcCg-CCUGCGcCCCUCggGGCCCGu -3' miRNA: 3'- -UCaGagGGACGCuGGGGGaaUUGGGC- -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 150759 | 0.66 | 0.872508 |
Target: 5'- cGGUCUcgugaCCCUGaaaGAugccuggacgcuauuCCCCCUccACCCGg -3' miRNA: 3'- -UCAGA-----GGGACg--CU---------------GGGGGAauUGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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