miRNA display CGI


Results 41 - 56 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33299 3' -58 NC_007605.1 + 111324 0.68 0.779357
Target:  5'- uGUCUCCCca-GaACCCCCUcgagaGACCCa -3'
miRNA:   3'- uCAGAGGGacgC-UGGGGGAa----UUGGGc -5'
33299 3' -58 NC_007605.1 + 123285 0.69 0.713362
Target:  5'- cGGUCUCaaaCUGCuGCCCCCgg-GCCUc -3'
miRNA:   3'- -UCAGAGg--GACGcUGGGGGaauUGGGc -5'
33299 3' -58 NC_007605.1 + 123523 0.67 0.8229
Target:  5'- gGGUaa-CCUGcCGACUCCCcUGGCCCc -3'
miRNA:   3'- -UCAgagGGAC-GCUGGGGGaAUUGGGc -5'
33299 3' -58 NC_007605.1 + 134564 0.68 0.732676
Target:  5'- cGUCgguguugCCCUGgGGCgCCCCUc-GCCCa -3'
miRNA:   3'- uCAGa------GGGACgCUG-GGGGAauUGGGc -5'
33299 3' -58 NC_007605.1 + 135459 0.68 0.761002
Target:  5'- cGUCaUCCCcGCGcACCCCCagu-CCCa -3'
miRNA:   3'- uCAG-AGGGaCGC-UGGGGGaauuGGGc -5'
33299 3' -58 NC_007605.1 + 137979 0.68 0.751658
Target:  5'- cGUCUCUCUGauaAUCCCCaaugUGACCCu -3'
miRNA:   3'- uCAGAGGGACgc-UGGGGGa---AUUGGGc -5'
33299 3' -58 NC_007605.1 + 150759 0.66 0.872508
Target:  5'- cGGUCUcgugaCCCUGaaaGAugccuggacgcuauuCCCCCUccACCCGg -3'
miRNA:   3'- -UCAGA-----GGGACg--CU---------------GGGGGAauUGGGC- -5'
33299 3' -58 NC_007605.1 + 152953 0.66 0.869639
Target:  5'- cGcCUCCCaUGCuaagGGCCCCCUUccuuuCCCu -3'
miRNA:   3'- uCaGAGGG-ACG----CUGGGGGAAuu---GGGc -5'
33299 3' -58 NC_007605.1 + 154665 0.66 0.869639
Target:  5'- gAGcCg-CCUGCGcCCCUCggGGCCCGu -3'
miRNA:   3'- -UCaGagGGACGCuGGGGGaaUUGGGC- -5'
33299 3' -58 NC_007605.1 + 157308 0.78 0.256335
Target:  5'- cAGUCUCCCagUGCGugCCCgUUAACCa- -3'
miRNA:   3'- -UCAGAGGG--ACGCugGGGgAAUUGGgc -5'
33299 3' -58 NC_007605.1 + 159990 0.66 0.839214
Target:  5'- -cUCUgCCUcCGGCCgCCCcgGGCCCGg -3'
miRNA:   3'- ucAGAgGGAcGCUGG-GGGaaUUGGGC- -5'
33299 3' -58 NC_007605.1 + 163104 0.68 0.732676
Target:  5'- uGGUCUa--UGCGGCCUCCUUcucGCCCa -3'
miRNA:   3'- -UCAGAgggACGCUGGGGGAAu--UGGGc -5'
33299 3' -58 NC_007605.1 + 169517 0.68 0.770238
Target:  5'- -uUC-CCCcGCGGCCCCCc-AGCCCc -3'
miRNA:   3'- ucAGaGGGaCGCUGGGGGaaUUGGGc -5'
33299 3' -58 NC_007605.1 + 170054 0.68 0.770238
Target:  5'- -uUC-CCCcGCGGCCCCCc-AGCCCc -3'
miRNA:   3'- ucAGaGGGaCGCUGGGGGaaUUGGGc -5'
33299 3' -58 NC_007605.1 + 170577 0.68 0.770238
Target:  5'- -uUC-CCCcGCGGCCCCCc-AGCCCc -3'
miRNA:   3'- ucAGaGGGaCGCUGGGGGaaUUGGGc -5'
33299 3' -58 NC_007605.1 + 171114 0.68 0.770238
Target:  5'- -uUC-CCCcGCGGCCCCCc-AGCCCc -3'
miRNA:   3'- ucAGaGGGaCGCUGGGGGaaUUGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.