Results 41 - 56 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33299 | 3' | -58 | NC_007605.1 | + | 123523 | 0.67 | 0.8229 |
Target: 5'- gGGUaa-CCUGcCGACUCCCcUGGCCCc -3' miRNA: 3'- -UCAgagGGAC-GCUGGGGGaAUUGGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 71323 | 0.67 | 0.831143 |
Target: 5'- uGUCaCCUUGCccaGCCCCCUggccucucUGACCCu -3' miRNA: 3'- uCAGaGGGACGc--UGGGGGA--------AUUGGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 88729 | 0.66 | 0.839214 |
Target: 5'- uGGUg-CCCUGgGAUCCCaugGACCCu -3' miRNA: 3'- -UCAgaGGGACgCUGGGGgaaUUGGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 75878 | 0.66 | 0.869639 |
Target: 5'- cGUCUCUUUGCcaaaggaccuGGCCCUCUUccCCCa -3' miRNA: 3'- uCAGAGGGACG----------CUGGGGGAAuuGGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 3373 | 0.66 | 0.869639 |
Target: 5'- aGGUCccguggCCCUGgcCGGCCCCauuucuccgAGCCCGu -3' miRNA: 3'- -UCAGa-----GGGAC--GCUGGGGgaa------UUGGGC- -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 58355 | 0.68 | 0.761002 |
Target: 5'- cGUCUCCggccuCUGCGGCCCCggccuCUgcggcCCCGg -3' miRNA: 3'- uCAGAGG-----GACGCUGGGG-----GAauu--GGGC- -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 137979 | 0.68 | 0.751658 |
Target: 5'- cGUCUCUCUGauaAUCCCCaaugUGACCCu -3' miRNA: 3'- uCAGAGGGACgc-UGGGGGa---AUUGGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 89235 | 0.68 | 0.732676 |
Target: 5'- gGGUCaCCUUG-GAUCCCCUUAAUCUa -3' miRNA: 3'- -UCAGaGGGACgCUGGGGGAAUUGGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 163104 | 0.68 | 0.732676 |
Target: 5'- uGGUCUa--UGCGGCCUCCUUcucGCCCa -3' miRNA: 3'- -UCAGAgggACGCUGGGGGAAu--UGGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 92057 | 0.72 | 0.544984 |
Target: 5'- aAGUCUCCCgagccCGACcaugCCCCUgaaGCCCGg -3' miRNA: 3'- -UCAGAGGGac---GCUG----GGGGAau-UGGGC- -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 50861 | 0.72 | 0.522759 |
Target: 5'- cGcCUCCCcacggccgucgggcUGCGACCCCgUgcGCCCGu -3' miRNA: 3'- uCaGAGGG--------------ACGCUGGGGgAauUGGGC- -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 61167 | 0.72 | 0.522759 |
Target: 5'- uGGUCUCCUUcggcaGCGACCuggCCCUcccuucccccgagcUGACCCGg -3' miRNA: 3'- -UCAGAGGGA-----CGCUGG---GGGA--------------AUUGGGC- -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 100862 | 0.76 | 0.329208 |
Target: 5'- aGGUCUUCCU-CGAUCCCCU-GGCCCa -3' miRNA: 3'- -UCAGAGGGAcGCUGGGGGAaUUGGGc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 157308 | 0.78 | 0.256335 |
Target: 5'- cAGUCUCCCagUGCGugCCCgUUAACCa- -3' miRNA: 3'- -UCAGAGGG--ACGCugGGGgAAUUGGgc -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 53294 | 1.09 | 0.002109 |
Target: 5'- gAGUCUCCCUGCGACCCCCUUAACCCGg -3' miRNA: 3'- -UCAGAGGGACGCUGGGGGAAUUGGGC- -5' |
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33299 | 3' | -58 | NC_007605.1 | + | 150759 | 0.66 | 0.872508 |
Target: 5'- cGGUCUcgugaCCCUGaaaGAugccuggacgcuauuCCCCCUccACCCGg -3' miRNA: 3'- -UCAGA-----GGGACg--CU---------------GGGGGAauUGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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