miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33299 5' -57.8 NC_007605.1 + 2335 0.72 0.508697
Target:  5'- aCGUAcguGGCGCCCAGGAGUCGCagGAa- -3'
miRNA:   3'- -GCGU---CUGUGGGUCCUCGGCGagUUga -5'
33299 5' -57.8 NC_007605.1 + 3000 0.67 0.774739
Target:  5'- uGCAGACgGCCCucGAGCUGUucUCGGCc -3'
miRNA:   3'- gCGUCUG-UGGGucCUCGGCG--AGUUGa -5'
33299 5' -57.8 NC_007605.1 + 10681 0.66 0.851603
Target:  5'- cCGCccucaaGCGUCCGGGAGCCgggcgGCUCGGCUa -3'
miRNA:   3'- -GCGuc----UGUGGGUCCUCGG-----CGAGUUGA- -5'
33299 5' -57.8 NC_007605.1 + 12410 0.75 0.344282
Target:  5'- aGgAGGCGCCCGgaguGGGGCCGgUCGGCUg -3'
miRNA:   3'- gCgUCUGUGGGU----CCUCGGCgAGUUGA- -5'
33299 5' -57.8 NC_007605.1 + 12947 0.68 0.727324
Target:  5'- aGgAGGCGCCaggcgcGGGGCCGgUCGGCUc -3'
miRNA:   3'- gCgUCUGUGGgu----CCUCGGCgAGUUGA- -5'
33299 5' -57.8 NC_007605.1 + 13759 0.7 0.607414
Target:  5'- gGUGGACgaggcuggGCCCGGGAGCCGUg-GACg -3'
miRNA:   3'- gCGUCUG--------UGGGUCCUCGGCGagUUGa -5'
33299 5' -57.8 NC_007605.1 + 13959 0.7 0.627578
Target:  5'- uGgGGGCGCCCGGGGGUCggGCUgGGCc -3'
miRNA:   3'- gCgUCUGUGGGUCCUCGG--CGAgUUGa -5'
33299 5' -57.8 NC_007605.1 + 15479 0.75 0.344282
Target:  5'- aGgAGGCGCCCGgaguGGGGCCGgUCGGCUg -3'
miRNA:   3'- gCgUCUGUGGGU----CCUCGGCgAGUUGA- -5'
33299 5' -57.8 NC_007605.1 + 16016 0.68 0.727324
Target:  5'- aGgAGGCGCCaggcgcGGGGCCGgUCGGCUc -3'
miRNA:   3'- gCgUCUGUGGgu----CCUCGGCgAGUUGA- -5'
33299 5' -57.8 NC_007605.1 + 16828 0.7 0.607414
Target:  5'- gGUGGACgaggcuggGCCCGGGAGCCGUg-GACg -3'
miRNA:   3'- gCGUCUG--------UGGGUCCUCGGCGagUUGa -5'
33299 5' -57.8 NC_007605.1 + 17028 0.7 0.627578
Target:  5'- uGgGGGCGCCCGGGGGUCggGCUgGGCc -3'
miRNA:   3'- gCgUCUGUGGGUCCUCGG--CGAgUUGa -5'
33299 5' -57.8 NC_007605.1 + 18548 0.75 0.344282
Target:  5'- aGgAGGCGCCCGgaguGGGGCCGgUCGGCUg -3'
miRNA:   3'- gCgUCUGUGGGU----CCUCGGCgAGUUGA- -5'
33299 5' -57.8 NC_007605.1 + 19085 0.68 0.727324
Target:  5'- aGgAGGCGCCaggcgcGGGGCCGgUCGGCUc -3'
miRNA:   3'- gCgUCUGUGGgu----CCUCGGCgAGUUGA- -5'
33299 5' -57.8 NC_007605.1 + 19897 0.7 0.607414
Target:  5'- gGUGGACgaggcuggGCCCGGGAGCCGUg-GACg -3'
miRNA:   3'- gCGUCUG--------UGGGUCCUCGGCGagUUGa -5'
33299 5' -57.8 NC_007605.1 + 20097 0.7 0.627578
Target:  5'- uGgGGGCGCCCGGGGGUCggGCUgGGCc -3'
miRNA:   3'- gCgUCUGUGGGUCCUCGG--CGAgUUGa -5'
33299 5' -57.8 NC_007605.1 + 21617 0.75 0.344282
Target:  5'- aGgAGGCGCCCGgaguGGGGCCGgUCGGCUg -3'
miRNA:   3'- gCgUCUGUGGGU----CCUCGGCgAGUUGA- -5'
33299 5' -57.8 NC_007605.1 + 22153 0.69 0.667885
Target:  5'- aGgAGGCGCCaggcgcGGGGCCGgUCGGCUg -3'
miRNA:   3'- gCgUCUGUGGgu----CCUCGGCgAGUUGA- -5'
33299 5' -57.8 NC_007605.1 + 22966 0.7 0.607414
Target:  5'- gGUGGACgaggcuggGCCCGGGAGCCGUg-GACg -3'
miRNA:   3'- gCGUCUG--------UGGGUCCUCGGCGagUUGa -5'
33299 5' -57.8 NC_007605.1 + 23165 0.7 0.627578
Target:  5'- uGgGGGCGCCCGGGGGUCggGCUgGGCc -3'
miRNA:   3'- gCgUCUGUGGGUCCUCGG--CGAgUUGa -5'
33299 5' -57.8 NC_007605.1 + 24686 0.75 0.344282
Target:  5'- aGgAGGCGCCCGgaguGGGGCCGgUCGGCUg -3'
miRNA:   3'- gCgUCUGUGGGU----CCUCGGCgAGUUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.