miRNA display CGI


Results 21 - 40 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33300 3' -52.6 NC_007605.1 + 18012 0.68 0.969016
Target:  5'- aCCCUUCuacggaCUCGUCugGGUUcUUGGCcCCc -3'
miRNA:   3'- -GGGGAG------GAGUAGugCUAA-AGCCGuGG- -5'
33300 3' -52.6 NC_007605.1 + 14943 0.68 0.969016
Target:  5'- aCCCUUCuacggaCUCGUCugGGUUcUUGGCcCCc -3'
miRNA:   3'- -GGGGAG------GAGUAGugCUAA-AGCCGuGG- -5'
33300 3' -52.6 NC_007605.1 + 155778 0.68 0.969016
Target:  5'- aCCCCUgUUUAUC-CGAUggaaugaCGGCGCa -3'
miRNA:   3'- -GGGGAgGAGUAGuGCUAaa-----GCCGUGg -5'
33300 3' -52.6 NC_007605.1 + 48557 0.68 0.966237
Target:  5'- --aCUCCUCAggCACGAguuuaccaacaggCGGUACCa -3'
miRNA:   3'- gggGAGGAGUa-GUGCUaaa----------GCCGUGG- -5'
33300 3' -52.6 NC_007605.1 + 59516 0.68 0.965917
Target:  5'- cCCCCUCUccuUCAagGCGGgcaagCGGCGgCg -3'
miRNA:   3'- -GGGGAGG---AGUagUGCUaaa--GCCGUgG- -5'
33300 3' -52.6 NC_007605.1 + 61785 0.68 0.962606
Target:  5'- gCCgCCUCCUgCA-CACGAg--CGGCcaggGCCu -3'
miRNA:   3'- -GG-GGAGGA-GUaGUGCUaaaGCCG----UGG- -5'
33300 3' -52.6 NC_007605.1 + 24149 0.69 0.955327
Target:  5'- aCCCUUCuacggaCUCGUCugGGUUcUUGGCcCCu -3'
miRNA:   3'- -GGGGAG------GAGUAGugCUAA-AGCCGuGG- -5'
33300 3' -52.6 NC_007605.1 + 168929 0.69 0.955327
Target:  5'- uCUCCUCCUCuUgGCGcuacuGUUUUGGCugUa -3'
miRNA:   3'- -GGGGAGGAGuAgUGC-----UAAAGCCGugG- -5'
33300 3' -52.6 NC_007605.1 + 74424 0.69 0.947141
Target:  5'- gCCCUCgUCAggcCGCGAgaggaUGGCAUCg -3'
miRNA:   3'- gGGGAGgAGUa--GUGCUaaa--GCCGUGG- -5'
33300 3' -52.6 NC_007605.1 + 51360 0.69 0.933109
Target:  5'- uCCCCUCCUCccaacugCugGAgccggUCGGaggagGCCg -3'
miRNA:   3'- -GGGGAGGAGua-----GugCUaa---AGCCg----UGG- -5'
33300 3' -52.6 NC_007605.1 + 114682 0.7 0.927956
Target:  5'- cCCCUUCCUCAUacaGCGGg--UGGCuAUCu -3'
miRNA:   3'- -GGGGAGGAGUAg--UGCUaaaGCCG-UGG- -5'
33300 3' -52.6 NC_007605.1 + 90265 0.7 0.922564
Target:  5'- gCCCCUCCUUA-C-CGAUUcUGGCugUu -3'
miRNA:   3'- -GGGGAGGAGUaGuGCUAAaGCCGugG- -5'
33300 3' -52.6 NC_007605.1 + 52052 0.7 0.916933
Target:  5'- uCCCCUCCUCuacUGCGAcg--GGCACUc -3'
miRNA:   3'- -GGGGAGGAGua-GUGCUaaagCCGUGG- -5'
33300 3' -52.6 NC_007605.1 + 85445 0.7 0.904958
Target:  5'- cCCCCgaggCCUCugccggggaACGGg--CGGCACCu -3'
miRNA:   3'- -GGGGa---GGAGuag------UGCUaaaGCCGUGG- -5'
33300 3' -52.6 NC_007605.1 + 98989 0.7 0.904958
Target:  5'- uUCCUCCUCGUC-CGAcaa-GaGCGCCg -3'
miRNA:   3'- gGGGAGGAGUAGuGCUaaagC-CGUGG- -5'
33300 3' -52.6 NC_007605.1 + 75755 0.7 0.904958
Target:  5'- gUCCUCCUcCAUCugGGgggUGGCAUa -3'
miRNA:   3'- gGGGAGGA-GUAGugCUaaaGCCGUGg -5'
33300 3' -52.6 NC_007605.1 + 105334 0.7 0.904334
Target:  5'- gCCCUCCgcCAUCAgGcgUUCccacgggGGCGCCc -3'
miRNA:   3'- gGGGAGGa-GUAGUgCuaAAG-------CCGUGG- -5'
33300 3' -52.6 NC_007605.1 + 50405 0.71 0.870981
Target:  5'- cCCCCguggCCUUuggCACGGgccUGGCACCc -3'
miRNA:   3'- -GGGGa---GGAGua-GUGCUaaaGCCGUGG- -5'
33300 3' -52.6 NC_007605.1 + 170925 0.75 0.700905
Target:  5'- gCCC-CCUCAUCACGGUcacgcaUGGCugCg -3'
miRNA:   3'- gGGGaGGAGUAGUGCUAaa----GCCGugG- -5'
33300 3' -52.6 NC_007605.1 + 169865 0.75 0.700905
Target:  5'- gCCC-CCUCAUCACGGUcacgcaUGGCugCg -3'
miRNA:   3'- gGGGaGGAGUAGUGCUAaa----GCCGugG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.