miRNA display CGI


Results 21 - 40 of 317 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33300 5' -62.7 NC_007605.1 + 59367 0.66 0.69085
Target:  5'- gGGGGCAGgaggucucaaccuucUGG-GCUCgGGCCgCGGUGu -3'
miRNA:   3'- -CCCCGUU---------------ACCuCGGGgCUGG-GCCGCc -5'
33300 5' -62.7 NC_007605.1 + 87424 0.66 0.689904
Target:  5'- cGGGCccuuccgaAcaaucaucagugaccGUGGAGCccgcccaCCCGACCCcGGUGGa -3'
miRNA:   3'- cCCCG--------U---------------UACCUCG-------GGGCUGGG-CCGCC- -5'
33300 5' -62.7 NC_007605.1 + 129959 0.66 0.687065
Target:  5'- uGGGCAcugguuaaggAUGGguaacuaaaaGGCCCCcucaGAUCCGGCaGGu -3'
miRNA:   3'- cCCCGU----------UACC----------UCGGGG----CUGGGCCG-CC- -5'
33300 5' -62.7 NC_007605.1 + 88521 0.66 0.687065
Target:  5'- -uGGU-AUGGAGCCUgggGGgCCGGCGGc -3'
miRNA:   3'- ccCCGuUACCUCGGGg--CUgGGCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 134931 0.66 0.687065
Target:  5'- gGGGGCGAaGGcGUgCCCGAaCCCGGg-- -3'
miRNA:   3'- -CCCCGUUaCCuCG-GGGCU-GGGCCgcc -5'
33300 5' -62.7 NC_007605.1 + 110566 0.66 0.687065
Target:  5'- gGGGGC--UGGGcacauCCCUGACCCcucGGCGu -3'
miRNA:   3'- -CCCCGuuACCUc----GGGGCUGGG---CCGCc -5'
33300 5' -62.7 NC_007605.1 + 88090 0.66 0.686117
Target:  5'- aGGaGGCGucacuauGUGaGGCCCCGcggcaggagGCCCaGCGGa -3'
miRNA:   3'- -CC-CCGU-------UACcUCGGGGC---------UGGGcCGCC- -5'
33300 5' -62.7 NC_007605.1 + 63544 0.66 0.684221
Target:  5'- cGGGGCugucguacagcagguUGGccauccgcgucaGGCCCCcaccugccucGACCCgGGCGGc -3'
miRNA:   3'- -CCCCGuu-------------ACC------------UCGGGG----------CUGGG-CCGCC- -5'
33300 5' -62.7 NC_007605.1 + 131624 0.66 0.683273
Target:  5'- uGGGuCAcaauuggaacccgcAUGcucuccuuccucuGAGCCuuGGCCUGGCGGg -3'
miRNA:   3'- cCCC-GU--------------UAC-------------CUCGGggCUGGGCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 61099 0.66 0.677574
Target:  5'- aGGGGCuGUGGAcauaGgCCgGAUCCGcGCGc -3'
miRNA:   3'- -CCCCGuUACCU----CgGGgCUGGGC-CGCc -5'
33300 5' -62.7 NC_007605.1 + 54432 0.66 0.677574
Target:  5'- aGGGCcgaacgGAUGGcaucGGCCgCCGuCCUGGCGc -3'
miRNA:   3'- cCCCG------UUACC----UCGG-GGCuGGGCCGCc -5'
33300 5' -62.7 NC_007605.1 + 55961 0.66 0.677574
Target:  5'- uGGGCcuggccGGUGuGGCCUCGGCCCcaGGCGc -3'
miRNA:   3'- cCCCG------UUACcUCGGGGCUGGG--CCGCc -5'
33300 5' -62.7 NC_007605.1 + 95315 0.66 0.677574
Target:  5'- gGGGaaGCGAUGGGGCauaCUGGggagaCGGCGGg -3'
miRNA:   3'- -CCC--CGUUACCUCGg--GGCUgg---GCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 38461 0.66 0.677574
Target:  5'- cGGaGCGccaGGAaccccggcuGCCCCagGACCUGGCGGu -3'
miRNA:   3'- cCC-CGUua-CCU---------CGGGG--CUGGGCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 166156 0.66 0.677574
Target:  5'- cGGGGCuagGGGGaCCCGcGCCCauuGGCa- -3'
miRNA:   3'- -CCCCGuuaCCUCgGGGC-UGGG---CCGcc -5'
33300 5' -62.7 NC_007605.1 + 158134 0.66 0.668051
Target:  5'- gGGGGCGucAUaGAGCUCCG-UCUGGCuGGc -3'
miRNA:   3'- -CCCCGU--UAcCUCGGGGCuGGGCCG-CC- -5'
33300 5' -62.7 NC_007605.1 + 30946 0.66 0.668051
Target:  5'- gGGaGGCAGaGGgucGGCCuaGGCCCGG-GGa -3'
miRNA:   3'- -CC-CCGUUaCC---UCGGggCUGGGCCgCC- -5'
33300 5' -62.7 NC_007605.1 + 65101 0.66 0.667097
Target:  5'- cGGGGaCAAa-GAGCCCCGuaaagauGCCCGGgCa- -3'
miRNA:   3'- -CCCC-GUUacCUCGGGGC-------UGGGCC-Gcc -5'
33300 5' -62.7 NC_007605.1 + 21307 0.66 0.658502
Target:  5'- cGGGGaCGGaGGGGgCCUGaaGCCCGG-GGa -3'
miRNA:   3'- -CCCC-GUUaCCUCgGGGC--UGGGCCgCC- -5'
33300 5' -62.7 NC_007605.1 + 24376 0.66 0.658502
Target:  5'- cGGGGaCGGaGGGGgCCUGaaGCCCGG-GGa -3'
miRNA:   3'- -CCCC-GUUaCCUCgGGGC--UGGGCCgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.