miRNA display CGI


Results 21 - 40 of 385 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33301 3' -69.2 NC_007605.1 + 68239 0.66 0.367148
Target:  5'- gGGGCCGUUgaGGCCCacguugucugcucGGuaGCAGCGGaCUc -3'
miRNA:   3'- -UCCGGCGGgaCCGGG-------------CC--CGUCGCC-GG- -5'
33301 3' -69.2 NC_007605.1 + 22124 0.66 0.360556
Target:  5'- uGGCUgGCCgaGaCCCGGGUcugGGgGGCCu -3'
miRNA:   3'- uCCGG-CGGgaCcGGGCCCG---UCgCCGG- -5'
33301 3' -69.2 NC_007605.1 + 49694 0.66 0.360556
Target:  5'- cGGCgcugaugaUGCCaaGGcCCCGGucccagcggauGCGGCGGCCu -3'
miRNA:   3'- uCCG--------GCGGgaCC-GGGCC-----------CGUCGCCGG- -5'
33301 3' -69.2 NC_007605.1 + 40100 0.66 0.360556
Target:  5'- cGGUC-CgCUGGCCCcacccuggGGGUAGCcGCCg -3'
miRNA:   3'- uCCGGcGgGACCGGG--------CCCGUCGcCGG- -5'
33301 3' -69.2 NC_007605.1 + 3374 0.66 0.360556
Target:  5'- cAGGUC-CCgUGGCCCuGGC--CGGCCc -3'
miRNA:   3'- -UCCGGcGGgACCGGGcCCGucGCCGG- -5'
33301 3' -69.2 NC_007605.1 + 95715 0.66 0.353328
Target:  5'- gAGGCgGaagaCCaGGagcCCCGGGCGGCucaggaucagGGCCa -3'
miRNA:   3'- -UCCGgCg---GGaCC---GGGCCCGUCG----------CCGG- -5'
33301 3' -69.2 NC_007605.1 + 40295 0.66 0.353328
Target:  5'- cGGCCGagccaCCaggGGCCCGG-CGGgGGUg -3'
miRNA:   3'- uCCGGCg----GGa--CCGGGCCcGUCgCCGg -5'
33301 3' -69.2 NC_007605.1 + 162043 0.66 0.353328
Target:  5'- cGGCCGUacaCCcGGCCCu-GCAG-GGCCg -3'
miRNA:   3'- uCCGGCG---GGaCCGGGccCGUCgCCGG- -5'
33301 3' -69.2 NC_007605.1 + 40229 0.66 0.353328
Target:  5'- uGGCacagGCCUaggGGUCCaggGGGCAgccGCGGCCc -3'
miRNA:   3'- uCCGg---CGGGa--CCGGG---CCCGU---CGCCGG- -5'
33301 3' -69.2 NC_007605.1 + 77690 0.66 0.353328
Target:  5'- -cGUCGCCCcaGGCCCc--CAGUGGCCa -3'
miRNA:   3'- ucCGGCGGGa-CCGGGcccGUCGCCGG- -5'
33301 3' -69.2 NC_007605.1 + 151033 0.66 0.352611
Target:  5'- cGGGCCcaugaagGCCCgggGGCUggCGaGGCGGCGuCCg -3'
miRNA:   3'- -UCCGG-------CGGGa--CCGG--GC-CCGUCGCcGG- -5'
33301 3' -69.2 NC_007605.1 + 40471 0.66 0.352611
Target:  5'- cGGCCGCgguCCUcccccgugaacggGGCgcgCUGGGCcGCGGCUg -3'
miRNA:   3'- uCCGGCG---GGA-------------CCG---GGCCCGuCGCCGG- -5'
33301 3' -69.2 NC_007605.1 + 151108 0.66 0.346203
Target:  5'- cGGCCGCagCCU-GCCCcu-CGGCGGCCc -3'
miRNA:   3'- uCCGGCG--GGAcCGGGcccGUCGCCGG- -5'
33301 3' -69.2 NC_007605.1 + 143209 0.66 0.346203
Target:  5'- gAGGCCGCCgcaaGGaCgCCGGGC--CGGCUg -3'
miRNA:   3'- -UCCGGCGGga--CC-G-GGCCCGucGCCGG- -5'
33301 3' -69.2 NC_007605.1 + 168802 0.66 0.346203
Target:  5'- gGGGCCGUCgCgGGCCCGGu--G-GGCCc -3'
miRNA:   3'- -UCCGGCGG-GaCCGGGCCcguCgCCGG- -5'
33301 3' -69.2 NC_007605.1 + 40394 0.66 0.346203
Target:  5'- gAGGCCGCCgcaaGGaCgCCGGGC--CGGCUg -3'
miRNA:   3'- -UCCGGCGGga--CC-G-GGCCCGucGCCGG- -5'
33301 3' -69.2 NC_007605.1 + 136685 0.66 0.344086
Target:  5'- gGGGCgacCGCUCcGGCCCcaggaccguaggaaGGcGCGGUGGCUa -3'
miRNA:   3'- -UCCG---GCGGGaCCGGG--------------CC-CGUCGCCGG- -5'
33301 3' -69.2 NC_007605.1 + 162981 0.66 0.341978
Target:  5'- cGGCCGCCagucccaugugcucgCUcugcgaGGgCCGGGCccCGGCCg -3'
miRNA:   3'- uCCGGCGG---------------GA------CCgGGCCCGucGCCGG- -5'
33301 3' -69.2 NC_007605.1 + 12917 0.66 0.339183
Target:  5'- cGGCUgGCCgaGaCCCGGGUcugGGgGGCCu -3'
miRNA:   3'- uCCGG-CGGgaCcGGGCCCG---UCgCCGG- -5'
33301 3' -69.2 NC_007605.1 + 74856 0.66 0.339183
Target:  5'- cGGCuCGCCagcGGUCCGGGCAcucaaaGGUCu -3'
miRNA:   3'- uCCG-GCGGga-CCGGGCCCGUcg----CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.