miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33301 5' -57.7 NC_007605.1 + 30103 0.66 0.857453
Target:  5'- -gGGCCCggGCCGGGuuGGUCCagGGCc- -3'
miRNA:   3'- uaCCGGGa-UGGCCU--UUAGGgaCCGuc -5'
33301 5' -57.7 NC_007605.1 + 85439 0.66 0.857453
Target:  5'- -aGGCCuCUGCCGGGGAa--CgGGCGGc -3'
miRNA:   3'- uaCCGG-GAUGGCCUUUaggGaCCGUC- -5'
33301 5' -57.7 NC_007605.1 + 82840 0.66 0.857453
Target:  5'- -aGGCCac-UCGGggGUCCgagGGCGGg -3'
miRNA:   3'- uaCCGGgauGGCCuuUAGGga-CCGUC- -5'
33301 5' -57.7 NC_007605.1 + 74066 0.66 0.849665
Target:  5'- cUGGCCgaGCUgggGGAGGUCUUUGGCu- -3'
miRNA:   3'- uACCGGgaUGG---CCUUUAGGGACCGuc -5'
33301 5' -57.7 NC_007605.1 + 159986 0.66 0.849665
Target:  5'- cUGGCCCUgguGCgGGggG-CCugcgaggaggcgCUGGCGGg -3'
miRNA:   3'- uACCGGGA---UGgCCuuUaGG------------GACCGUC- -5'
33301 5' -57.7 NC_007605.1 + 133240 0.66 0.849665
Target:  5'- -gGGCCCacaugaguUCGGGGccuguGUCCCUgGGCAGu -3'
miRNA:   3'- uaCCGGGau------GGCCUU-----UAGGGA-CCGUC- -5'
33301 5' -57.7 NC_007605.1 + 112275 0.66 0.849665
Target:  5'- uUGGCCCacucccaaACCuGGAccUCCCUGGUg- -3'
miRNA:   3'- uACCGGGa-------UGG-CCUuuAGGGACCGuc -5'
33301 5' -57.7 NC_007605.1 + 136864 0.66 0.849665
Target:  5'- -aGGCCCUgcGCCGGGAgacgcuGUCCUacGGCc- -3'
miRNA:   3'- uaCCGGGA--UGGCCUU------UAGGGa-CCGuc -5'
33301 5' -57.7 NC_007605.1 + 65711 0.66 0.848875
Target:  5'- -aGGCCCUGCaccccgaggcccaUGGAGgccauAUCCCUGGa-- -3'
miRNA:   3'- uaCCGGGAUG-------------GCCUU-----UAGGGACCguc -5'
33301 5' -57.7 NC_007605.1 + 81492 0.66 0.847291
Target:  5'- -cGGCCCUG--GGAGccAUCCCUgacacaggcugcggGGCAGg -3'
miRNA:   3'- uaCCGGGAUggCCUU--UAGGGA--------------CCGUC- -5'
33301 5' -57.7 NC_007605.1 + 103942 0.66 0.841682
Target:  5'- -aGGCCuCUGCCGGGAggUgCUGGg-- -3'
miRNA:   3'- uaCCGG-GAUGGCCUUuaGgGACCguc -5'
33301 5' -57.7 NC_007605.1 + 120474 0.66 0.840873
Target:  5'- uUGGCCCUGCUGGAcaaucugAGUCUCUacuuuuGCAu -3'
miRNA:   3'- uACCGGGAUGGCCU-------UUAGGGAc-----CGUc -5'
33301 5' -57.7 NC_007605.1 + 51483 0.66 0.840063
Target:  5'- cUGGCCCUcccagcccacagaGCCcccucuuagagaaGGuggcCCCUGGCAGg -3'
miRNA:   3'- uACCGGGA-------------UGG-------------CCuuuaGGGACCGUC- -5'
33301 5' -57.7 NC_007605.1 + 53378 0.66 0.833511
Target:  5'- -aGGCCCcaagcGCCaGGc---CCCUGGCAGc -3'
miRNA:   3'- uaCCGGGa----UGG-CCuuuaGGGACCGUC- -5'
33301 5' -57.7 NC_007605.1 + 48970 0.66 0.833511
Target:  5'- gGUGGUCCUGCgGGggGUgaCggucaGGCAGc -3'
miRNA:   3'- -UACCGGGAUGgCCuuUAggGa----CCGUC- -5'
33301 5' -57.7 NC_007605.1 + 124738 0.66 0.833511
Target:  5'- -cGGCCCUACaguuuGGGGucgaugCCCUGGagaGGg -3'
miRNA:   3'- uaCCGGGAUGg----CCUUua----GGGACCg--UC- -5'
33301 5' -57.7 NC_007605.1 + 162826 0.66 0.828521
Target:  5'- --uGCCCgucuccggcACCGGGGucagagagcucuucuGUCCCUGGCAa -3'
miRNA:   3'- uacCGGGa--------UGGCCUU---------------UAGGGACCGUc -5'
33301 5' -57.7 NC_007605.1 + 72470 0.66 0.825158
Target:  5'- cUGGCCCUcGCUcauGAGcaCCCUGGCAa -3'
miRNA:   3'- uACCGGGA-UGGc--CUUuaGGGACCGUc -5'
33301 5' -57.7 NC_007605.1 + 69151 0.66 0.825158
Target:  5'- -cGGCCCUcACCGc--GUgCUUGGCGGg -3'
miRNA:   3'- uaCCGGGA-UGGCcuuUAgGGACCGUC- -5'
33301 5' -57.7 NC_007605.1 + 72894 0.66 0.825158
Target:  5'- -gGGCCCUggacACUGGA---CCCaGGCGGc -3'
miRNA:   3'- uaCCGGGA----UGGCCUuuaGGGaCCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.