miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33301 5' -57.7 NC_007605.1 + 53992 1.06 0.003248
Target:  5'- cAUGGCCCUACCGGAAAUCCCUGGCAGc -3'
miRNA:   3'- -UACCGGGAUGGCCUUUAGGGACCGUC- -5'
33301 5' -57.7 NC_007605.1 + 116871 0.79 0.211486
Target:  5'- -aGGCCCUGCCGGcGAUCCUgGGCu- -3'
miRNA:   3'- uaCCGGGAUGGCCuUUAGGGaCCGuc -5'
33301 5' -57.7 NC_007605.1 + 101528 0.78 0.233122
Target:  5'- -gGGCUCUACuCGGGAGUCUCUGGCc- -3'
miRNA:   3'- uaCCGGGAUG-GCCUUUAGGGACCGuc -5'
33301 5' -57.7 NC_007605.1 + 56564 0.76 0.316416
Target:  5'- uUGGUCCUggacgacgaaaGCUGGAAgcgccuccuAUCCCUGGCGGa -3'
miRNA:   3'- uACCGGGA-----------UGGCCUU---------UAGGGACCGUC- -5'
33301 5' -57.7 NC_007605.1 + 68773 0.75 0.328832
Target:  5'- cUGGCCUUGCCGGAcucucccaaguaggGGUCCUaggaggUGGCGGa -3'
miRNA:   3'- uACCGGGAUGGCCU--------------UUAGGG------ACCGUC- -5'
33301 5' -57.7 NC_007605.1 + 120507 0.73 0.456122
Target:  5'- uUGGCCCUcCCGGAGGUgccagggccCCUUGGCu- -3'
miRNA:   3'- uACCGGGAuGGCCUUUA---------GGGACCGuc -5'
33301 5' -57.7 NC_007605.1 + 33187 0.73 0.456122
Target:  5'- cUGGCCCgaUACCGGGGggCCCgGGcCGGg -3'
miRNA:   3'- uACCGGG--AUGGCCUUuaGGGaCC-GUC- -5'
33301 5' -57.7 NC_007605.1 + 27050 0.73 0.456122
Target:  5'- cUGGCCCgaUACCGGGGggCCCgGGcCGGg -3'
miRNA:   3'- uACCGGG--AUGGCCUUuaGGGaCC-GUC- -5'
33301 5' -57.7 NC_007605.1 + 20912 0.73 0.456122
Target:  5'- cUGGCCCgaUACCGGGGggCCCgGGcCGGg -3'
miRNA:   3'- uACCGGG--AUGGCCUUuaGGGaCC-GUC- -5'
33301 5' -57.7 NC_007605.1 + 14774 0.73 0.456122
Target:  5'- cUGGCCCgaUACCGGGGggCCCgGGcCGGg -3'
miRNA:   3'- uACCGGG--AUGGCCUUuaGGGaCC-GUC- -5'
33301 5' -57.7 NC_007605.1 + 23981 0.73 0.456122
Target:  5'- cUGGCCCgaUACCGGGGggCCCgGGcCGGg -3'
miRNA:   3'- uACCGGG--AUGGCCUUuaGGGaCC-GUC- -5'
33301 5' -57.7 NC_007605.1 + 17843 0.73 0.456122
Target:  5'- cUGGCCCgaUACCGGGGggCCCgGGcCGGg -3'
miRNA:   3'- uACCGGG--AUGGCCUUuaGGGaCC-GUC- -5'
33301 5' -57.7 NC_007605.1 + 157548 0.73 0.465341
Target:  5'- -cGGCCCc-CgGGAAGUCCCUGGgCAc -3'
miRNA:   3'- uaCCGGGauGgCCUUUAGGGACC-GUc -5'
33301 5' -57.7 NC_007605.1 + 57075 0.73 0.465341
Target:  5'- -cGGCCuCUAaCCGGGAAgugCCgaGGCAGa -3'
miRNA:   3'- uaCCGG-GAU-GGCCUUUa--GGgaCCGUC- -5'
33301 5' -57.7 NC_007605.1 + 5210 0.72 0.474656
Target:  5'- gGUGGCacggCCUGCCaGGGcagAGUCCCUGGCc- -3'
miRNA:   3'- -UACCG----GGAUGG-CCU---UUAGGGACCGuc -5'
33301 5' -57.7 NC_007605.1 + 135401 0.72 0.493559
Target:  5'- -gGGCCCUGgcCCGGGugggcuUCCC-GGCAGa -3'
miRNA:   3'- uaCCGGGAU--GGCCUuu----AGGGaCCGUC- -5'
33301 5' -57.7 NC_007605.1 + 135195 0.72 0.503139
Target:  5'- -gGGCCuCUGCCGGGAAgcccaCCCgGGcCAGg -3'
miRNA:   3'- uaCCGG-GAUGGCCUUUa----GGGaCC-GUC- -5'
33301 5' -57.7 NC_007605.1 + 103471 0.72 0.522535
Target:  5'- -cGaGCUCUACCGGAgcAGUCgCCUGGCc- -3'
miRNA:   3'- uaC-CGGGAUGGCCU--UUAG-GGACCGuc -5'
33301 5' -57.7 NC_007605.1 + 138866 0.72 0.52645
Target:  5'- -aGGUCCUACCGGAgcuccuugucuugauAAUCCCUGuaAa -3'
miRNA:   3'- uaCCGGGAUGGCCU---------------UUAGGGACcgUc -5'
33301 5' -57.7 NC_007605.1 + 61065 0.71 0.56213
Target:  5'- -gGGCCCcuccgaUGCCuGGGAGUCCCcccaGGCGGu -3'
miRNA:   3'- uaCCGGG------AUGG-CCUUUAGGGa---CCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.