miRNA display CGI


Results 21 - 40 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33301 5' -57.7 NC_007605.1 + 162055 0.71 0.572164
Target:  5'- -cGGCCCUGCaGGGccgcGUCCagguCUGGCAGg -3'
miRNA:   3'- uaCCGGGAUGgCCUu---UAGG----GACCGUC- -5'
33301 5' -57.7 NC_007605.1 + 52026 0.71 0.58224
Target:  5'- cUGaGCCCUuCCGG---UCCCUGGUGGa -3'
miRNA:   3'- uAC-CGGGAuGGCCuuuAGGGACCGUC- -5'
33301 5' -57.7 NC_007605.1 + 22062 0.7 0.602491
Target:  5'- -cGGaCCCUGCCuGGAGA-CCCUGGgGu -3'
miRNA:   3'- uaCC-GGGAUGG-CCUUUaGGGACCgUc -5'
33301 5' -57.7 NC_007605.1 + 28199 0.7 0.602491
Target:  5'- -cGGaCCCUGCCuGGAGA-CCCUGGgGu -3'
miRNA:   3'- uaCC-GGGAUGG-CCUUUaGGGACCgUc -5'
33301 5' -57.7 NC_007605.1 + 18993 0.7 0.602491
Target:  5'- -cGGaCCCUGCCuGGAGA-CCCUGGgGu -3'
miRNA:   3'- uaCC-GGGAUGG-CCUUUaGGGACCgUc -5'
33301 5' -57.7 NC_007605.1 + 15924 0.7 0.602491
Target:  5'- -cGGaCCCUGCCuGGAGA-CCCUGGgGu -3'
miRNA:   3'- uaCC-GGGAUGG-CCUUUaGGGACCgUc -5'
33301 5' -57.7 NC_007605.1 + 31268 0.7 0.602491
Target:  5'- -cGGaCCCUGCCuGGAGA-CCCUGGgGu -3'
miRNA:   3'- uaCC-GGGAUGG-CCUUUaGGGACCgUc -5'
33301 5' -57.7 NC_007605.1 + 12855 0.7 0.602491
Target:  5'- -cGGaCCCUGCCuGGAGA-CCCUGGgGu -3'
miRNA:   3'- uaCC-GGGAUGG-CCUUUaGGGACCgUc -5'
33301 5' -57.7 NC_007605.1 + 34337 0.7 0.602491
Target:  5'- -cGGaCCCUGCCuGGAGA-CCCUGGgGu -3'
miRNA:   3'- uaCC-GGGAUGG-CCUUUaGGGACCgUc -5'
33301 5' -57.7 NC_007605.1 + 133427 0.7 0.633013
Target:  5'- -aGGUCCUGgCGGAucuccuccgCCCUGGcCAGg -3'
miRNA:   3'- uaCCGGGAUgGCCUuua------GGGACC-GUC- -5'
33301 5' -57.7 NC_007605.1 + 15383 0.7 0.643196
Target:  5'- -cGGCCCUACUGGGGA-CCggGGgAGg -3'
miRNA:   3'- uaCCGGGAUGGCCUUUaGGgaCCgUC- -5'
33301 5' -57.7 NC_007605.1 + 93531 0.7 0.643196
Target:  5'- -aGGCCCUcugcaGCUGGAuaauAUCCCaggaUGGCAu -3'
miRNA:   3'- uaCCGGGA-----UGGCCUu---UAGGG----ACCGUc -5'
33301 5' -57.7 NC_007605.1 + 24590 0.7 0.643196
Target:  5'- -cGGCCCUACUGGGGA-CCggGGgAGg -3'
miRNA:   3'- uaCCGGGAUGGCCUUUaGGgaCCgUC- -5'
33301 5' -57.7 NC_007605.1 + 2898 0.7 0.643196
Target:  5'- -aGGCCUguuggcGCCGGGccgccgCCCUGGCAu -3'
miRNA:   3'- uaCCGGGa-----UGGCCUuua---GGGACCGUc -5'
33301 5' -57.7 NC_007605.1 + 12314 0.7 0.643196
Target:  5'- -cGGCCCUACUGGGGA-CCggGGgAGg -3'
miRNA:   3'- uaCCGGGAUGGCCUUUaGGgaCCgUC- -5'
33301 5' -57.7 NC_007605.1 + 18452 0.7 0.643196
Target:  5'- -cGGCCCUACUGGGGA-CCggGGgAGg -3'
miRNA:   3'- uaCCGGGAUGGCCUUUaGGgaCCgUC- -5'
33301 5' -57.7 NC_007605.1 + 21521 0.7 0.643196
Target:  5'- -cGGCCCUACUGGGGA-CCggGGgAGg -3'
miRNA:   3'- uaCCGGGAUGGCCUUUaGGgaCCgUC- -5'
33301 5' -57.7 NC_007605.1 + 27659 0.7 0.643196
Target:  5'- -cGGCCCUACUGGGGA-CCggGGgAGg -3'
miRNA:   3'- uaCCGGGAUGGCCUUUaGGgaCCgUC- -5'
33301 5' -57.7 NC_007605.1 + 30728 0.7 0.643196
Target:  5'- -cGGCCCUACUGGGGA-CCggGGgAGg -3'
miRNA:   3'- uaCCGGGAUGGCCUUUaGGgaCCgUC- -5'
33301 5' -57.7 NC_007605.1 + 33797 0.7 0.643196
Target:  5'- -cGGCCCUACUGGGGA-CCggGGgAGg -3'
miRNA:   3'- uaCCGGGAUGGCCUUUaGGgaCCgUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.