miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33301 5' -57.7 NC_007605.1 + 34484 0.69 0.65337
Target:  5'- -aGGCCa-GCCGGAGGgaCCCcGGCAGc -3'
miRNA:   3'- uaCCGGgaUGGCCUUUa-GGGaCCGUC- -5'
33301 5' -57.7 NC_007605.1 + 22208 0.69 0.65337
Target:  5'- -aGGCCa-GCCGGAGGgaCCCcGGCAGc -3'
miRNA:   3'- uaCCGGgaUGGCCUUUa-GGGaCCGUC- -5'
33301 5' -57.7 NC_007605.1 + 22502 0.69 0.65337
Target:  5'- -aGGCCa-GCCGGAGGgaCCCcGGCAGc -3'
miRNA:   3'- uaCCGGgaUGGCCUUUa-GGGaCCGUC- -5'
33301 5' -57.7 NC_007605.1 + 25277 0.69 0.65337
Target:  5'- -aGGCCa-GCCGGAGGgaCCCcGGCAGc -3'
miRNA:   3'- uaCCGGgaUGGCCUUUa-GGGaCCGUC- -5'
33301 5' -57.7 NC_007605.1 + 25571 0.69 0.65337
Target:  5'- -aGGCCa-GCCGGAGGgaCCCcGGCAGc -3'
miRNA:   3'- uaCCGGgaUGGCCUUUa-GGGaCCGUC- -5'
33301 5' -57.7 NC_007605.1 + 28346 0.69 0.65337
Target:  5'- -aGGCCa-GCCGGAGGgaCCCcGGCAGc -3'
miRNA:   3'- uaCCGGgaUGGCCUUUa-GGGaCCGUC- -5'
33301 5' -57.7 NC_007605.1 + 28640 0.69 0.65337
Target:  5'- -aGGCCa-GCCGGAGGgaCCCcGGCAGc -3'
miRNA:   3'- uaCCGGgaUGGCCUUUa-GGGaCCGUC- -5'
33301 5' -57.7 NC_007605.1 + 31415 0.69 0.65337
Target:  5'- -aGGCCa-GCCGGAGGgaCCCcGGCAGc -3'
miRNA:   3'- uaCCGGgaUGGCCUUUa-GGGaCCGUC- -5'
33301 5' -57.7 NC_007605.1 + 31709 0.69 0.65337
Target:  5'- -aGGCCa-GCCGGAGGgaCCCcGGCAGc -3'
miRNA:   3'- uaCCGGgaUGGCCUUUa-GGGaCCGUC- -5'
33301 5' -57.7 NC_007605.1 + 19433 0.69 0.65337
Target:  5'- -aGGCCa-GCCGGAGGgaCCCcGGCAGc -3'
miRNA:   3'- uaCCGGgaUGGCCUUUa-GGGaCCGUC- -5'
33301 5' -57.7 NC_007605.1 + 19139 0.69 0.65337
Target:  5'- -aGGCCa-GCCGGAGGgaCCCcGGCAGc -3'
miRNA:   3'- uaCCGGgaUGGCCUUUa-GGGaCCGUC- -5'
33301 5' -57.7 NC_007605.1 + 16364 0.69 0.65337
Target:  5'- -aGGCCa-GCCGGAGGgaCCCcGGCAGc -3'
miRNA:   3'- uaCCGGgaUGGCCUUUa-GGGaCCGUC- -5'
33301 5' -57.7 NC_007605.1 + 135195 0.72 0.503139
Target:  5'- -gGGCCuCUGCCGGGAAgcccaCCCgGGcCAGg -3'
miRNA:   3'- uaCCGG-GAUGGCCUUUa----GGGaCC-GUC- -5'
33301 5' -57.7 NC_007605.1 + 103471 0.72 0.522535
Target:  5'- -cGaGCUCUACCGGAgcAGUCgCCUGGCc- -3'
miRNA:   3'- uaC-CGGGAUGGCCU--UUAG-GGACCGuc -5'
33301 5' -57.7 NC_007605.1 + 138866 0.72 0.52645
Target:  5'- -aGGUCCUACCGGAgcuccuugucuugauAAUCCCUGuaAa -3'
miRNA:   3'- uaCCGGGAUGGCCU---------------UUAGGGACcgUc -5'
33301 5' -57.7 NC_007605.1 + 162055 0.71 0.572164
Target:  5'- -cGGCCCUGCaGGGccgcGUCCagguCUGGCAGg -3'
miRNA:   3'- uaCCGGGAUGgCCUu---UAGG----GACCGUC- -5'
33301 5' -57.7 NC_007605.1 + 93531 0.7 0.643196
Target:  5'- -aGGCCCUcugcaGCUGGAuaauAUCCCaggaUGGCAu -3'
miRNA:   3'- uaCCGGGA-----UGGCCUu---UAGGG----ACCGUc -5'
33301 5' -57.7 NC_007605.1 + 13001 0.69 0.65337
Target:  5'- -aGGCCa-GCCGGAGGgaCCCcGGCAGc -3'
miRNA:   3'- uaCCGGgaUGGCCUUUa-GGGaCCGUC- -5'
33301 5' -57.7 NC_007605.1 + 13295 0.69 0.65337
Target:  5'- -aGGCCa-GCCGGAGGgaCCCcGGCAGc -3'
miRNA:   3'- uaCCGGgaUGGCCUUUa-GGGaCCGUC- -5'
33301 5' -57.7 NC_007605.1 + 16070 0.69 0.65337
Target:  5'- -aGGCCa-GCCGGAGGgaCCCcGGCAGc -3'
miRNA:   3'- uaCCGGgaUGGCCUUUa-GGGaCCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.