miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33302 3' -59.6 NC_007605.1 + 21634 0.67 0.642619
Target:  5'- -gGGCCgGucGGCUGGGCUGGCCgaGCCc -3'
miRNA:   3'- uaCUGGgU--CCGGUCCGAUUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 18565 0.67 0.642619
Target:  5'- -gGGCCgGucGGCUGGGCUGGCCgaGCCc -3'
miRNA:   3'- uaCUGGgU--CCGGUCCGAUUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 12427 0.67 0.642619
Target:  5'- -gGGCCgGucGGCUGGGCUGGCCgaGCCc -3'
miRNA:   3'- uaCUGGgU--CCGGUCCGAUUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 158829 0.67 0.683044
Target:  5'- -gGGCCU-GGCCgGGGCUGACCgcguccGCCc -3'
miRNA:   3'- uaCUGGGuCCGG-UCCGAUUGGa-----CGGa -5'
33302 3' -59.6 NC_007605.1 + 105591 0.67 0.693068
Target:  5'- -aGGCCCAGGa-GGGCg--UCUGCCa -3'
miRNA:   3'- uaCUGGGUCCggUCCGauuGGACGGa -5'
33302 3' -59.6 NC_007605.1 + 75193 0.68 0.585908
Target:  5'- cGUGgccACCUucuccaucuccaucaGGGCCAGGCUGucGCCaGCCUg -3'
miRNA:   3'- -UAC---UGGG---------------UCCGGUCCGAU--UGGaCGGA- -5'
33302 3' -59.6 NC_007605.1 + 48004 0.68 0.622325
Target:  5'- -gGGCCguGGCCAGGgguuACCgagGCCUc -3'
miRNA:   3'- uaCUGGguCCGGUCCgau-UGGa--CGGA- -5'
33302 3' -59.6 NC_007605.1 + 4054 0.68 0.60206
Target:  5'- cGUGGCCUGGGCguGaaGCUGACCUuuggcucgGCCUc -3'
miRNA:   3'- -UACUGGGUCCGguC--CGAUUGGA--------CGGA- -5'
33302 3' -59.6 NC_007605.1 + 64129 0.68 0.582888
Target:  5'- -aGACCCcgaggcugauguccuGGCCGGGC--GCCUGCUc -3'
miRNA:   3'- uaCUGGGu--------------CCGGUCCGauUGGACGGa -5'
33302 3' -59.6 NC_007605.1 + 4386 0.68 0.581883
Target:  5'- -cGACggGGGCCuGG-UGACCUGCCUg -3'
miRNA:   3'- uaCUGggUCCGGuCCgAUUGGACGGA- -5'
33302 3' -59.6 NC_007605.1 + 163232 0.68 0.612185
Target:  5'- cAUGACCCAcGGCCuGGggAcCCUGCa- -3'
miRNA:   3'- -UACUGGGU-CCGGuCCgaUuGGACGga -5'
33302 3' -59.6 NC_007605.1 + 122718 0.68 0.632472
Target:  5'- -aGACCCuGGCCuacaacGGGCcAGCCUucaGCCa -3'
miRNA:   3'- uaCUGGGuCCGG------UCCGaUUGGA---CGGa -5'
33302 3' -59.6 NC_007605.1 + 82861 0.68 0.636532
Target:  5'- uUGGCCaccuuccccuugaaCAGGCCacucggggguccgaGGGCggGGCCUGCCa -3'
miRNA:   3'- uACUGG--------------GUCCGG--------------UCCGa-UUGGACGGa -5'
33302 3' -59.6 NC_007605.1 + 60475 0.68 0.612185
Target:  5'- -gGGCCCuGGCCAcGGCcGACacgGCCa -3'
miRNA:   3'- uaCUGGGuCCGGU-CCGaUUGga-CGGa -5'
33302 3' -59.6 NC_007605.1 + 63493 0.68 0.622325
Target:  5'- -cGACCCGGGC--GGCUAcACCccgGCCg -3'
miRNA:   3'- uaCUGGGUCCGguCCGAU-UGGa--CGGa -5'
33302 3' -59.6 NC_007605.1 + 82753 0.68 0.60206
Target:  5'- -aGGCCacucggGGGCCugaGGGCagGGCCUGCCa -3'
miRNA:   3'- uaCUGGg-----UCCGG---UCCGa-UUGGACGGa -5'
33302 3' -59.6 NC_007605.1 + 73625 0.68 0.580877
Target:  5'- -gGGCCUGGGCCGGGCUcagugugGACgUGgCCc -3'
miRNA:   3'- uaCUGGGUCCGGUCCGA-------UUGgAC-GGa -5'
33302 3' -59.6 NC_007605.1 + 91613 0.68 0.622325
Target:  5'- -gGAUCCccguGGGCCAaccGGCcccuGCCUGCCUc -3'
miRNA:   3'- uaCUGGG----UCCGGU---CCGau--UGGACGGA- -5'
33302 3' -59.6 NC_007605.1 + 162241 0.68 0.60206
Target:  5'- -cGGCCCugcaGGGCCGGGUguacGGCCggcggcUGCCUg -3'
miRNA:   3'- uaCUGGG----UCCGGUCCGa---UUGG------ACGGA- -5'
33302 3' -59.6 NC_007605.1 + 154500 0.69 0.551898
Target:  5'- cAUGAUaacgCCGGGagaagagcaCAGGCUAGCCgGCCUg -3'
miRNA:   3'- -UACUG----GGUCCg--------GUCCGAUUGGaCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.