Results 61 - 80 of 155 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 18871 | 0.69 | 0.532167 |
Target: 5'- ---cCCCGGGCCuAGGCcGACCcucUGCCUc -3' miRNA: 3'- uacuGGGUCCGG-UCCGaUUGG---ACGGA- -5' |
|||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 28078 | 0.69 | 0.532167 |
Target: 5'- ---cCCCGGGCCuAGGCcGACCcucUGCCUc -3' miRNA: 3'- uacuGGGUCCGG-UCCGaUUGG---ACGGA- -5' |
|||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 25009 | 0.69 | 0.532167 |
Target: 5'- ---cCCCGGGCCuAGGCcGACCcucUGCCUc -3' miRNA: 3'- uacuGGGUCCGG-UCCGaUUGG---ACGGA- -5' |
|||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 161033 | 0.69 | 0.551898 |
Target: 5'- -aGGCCUcGGCCGGGCUG--CUGCUg -3' miRNA: 3'- uaCUGGGuCCGGUCCGAUugGACGGa -5' |
|||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 34215 | 0.69 | 0.532167 |
Target: 5'- ---cCCCGGGCCuAGGCcGACCcucUGCCUc -3' miRNA: 3'- uacuGGGUCCGG-UCCGaUUGG---ACGGA- -5' |
|||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 21940 | 0.69 | 0.532167 |
Target: 5'- ---cCCCGGGCCuAGGCcGACCcucUGCCUc -3' miRNA: 3'- uacuGGGUCCGG-UCCGaUUGG---ACGGA- -5' |
|||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 154500 | 0.69 | 0.551898 |
Target: 5'- cAUGAUaacgCCGGGagaagagcaCAGGCUAGCCgGCCUg -3' miRNA: 3'- -UACUG----GGUCCg--------GUCCGAUUGGaCGGA- -5' |
|||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 58707 | 0.69 | 0.561847 |
Target: 5'- -gGACCUcGGCCAGGgaCUGAacaaCUGCCg -3' miRNA: 3'- uaCUGGGuCCGGUCC--GAUUg---GACGGa -5' |
|||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 20023 | 0.69 | 0.526297 |
Target: 5'- -aGGCUCAGGCCAuGCgcgcccugucaccaGGCCUGCCa -3' miRNA: 3'- uaCUGGGUCCGGUcCGa-------------UUGGACGGa -5' |
|||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 23092 | 0.69 | 0.526297 |
Target: 5'- -aGGCUCAGGCCAuGCgcgcccugucaccaGGCCUGCCa -3' miRNA: 3'- uaCUGGGUCCGGUcCGa-------------UUGGACGGa -5' |
|||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 26161 | 0.69 | 0.526297 |
Target: 5'- -aGGCUCAGGCCAuGCgcgcccugucaccaGGCCUGCCa -3' miRNA: 3'- uaCUGGGUCCGGUcCGa-------------UUGGACGGa -5' |
|||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 29230 | 0.69 | 0.526297 |
Target: 5'- -aGGCUCAGGCCAuGCgcgcccugucaccaGGCCUGCCa -3' miRNA: 3'- uaCUGGGUCCGGUcCGa-------------UUGGACGGa -5' |
|||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 32299 | 0.69 | 0.526297 |
Target: 5'- -aGGCUCAGGCCAuGCgcgcccugucaccaGGCCUGCCa -3' miRNA: 3'- uaCUGGGUCCGGUcCGa-------------UUGGACGGa -5' |
|||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 36641 | 0.69 | 0.529229 |
Target: 5'- -aGGCCCacaaacagccccucAGGCCAGGUUGGuCCaGCCa -3' miRNA: 3'- uaCUGGG--------------UCCGGUCCGAUU-GGaCGGa -5' |
|||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 53838 | 0.69 | 0.532167 |
Target: 5'- --uGCCCGGGCCAGGgcGGCCUcgaggggaGCCUg -3' miRNA: 3'- uacUGGGUCCGGUCCgaUUGGA--------CGGA- -5' |
|||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 62170 | 0.69 | 0.532167 |
Target: 5'- cAUGGCCUugauguccgcGGCCguGGGCUGAcCCUGCCc -3' miRNA: 3'- -UACUGGGu---------CCGG--UCCGAUU-GGACGGa -5' |
|||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 164922 | 0.69 | 0.542003 |
Target: 5'- uGUGGCCgCcGGCCAGGCUGucACC-GCUUu -3' miRNA: 3'- -UACUGG-GuCCGGUCCGAU--UGGaCGGA- -5' |
|||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 61262 | 0.69 | 0.542003 |
Target: 5'- --aGCCgGGGCCGGG---GCCUGCCa -3' miRNA: 3'- uacUGGgUCCGGUCCgauUGGACGGa -5' |
|||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 13886 | 0.69 | 0.526297 |
Target: 5'- -aGGCUCAGGCCAuGCgcgcccugucaccaGGCCUGCCa -3' miRNA: 3'- uaCUGGGUCCGGUcCGa-------------UUGGACGGa -5' |
|||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 121917 | 0.69 | 0.542003 |
Target: 5'- cAUGACUCcGGCCAGGgUGGCg-GCCa -3' miRNA: 3'- -UACUGGGuCCGGUCCgAUUGgaCGGa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home