miRNA display CGI


Results 81 - 100 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33302 3' -59.6 NC_007605.1 + 164922 0.69 0.542003
Target:  5'- uGUGGCCgCcGGCCAGGCUGucACC-GCUUu -3'
miRNA:   3'- -UACUGG-GuCCGGUCCGAU--UGGaCGGA- -5'
33302 3' -59.6 NC_007605.1 + 61262 0.69 0.542003
Target:  5'- --aGCCgGGGCCGGG---GCCUGCCa -3'
miRNA:   3'- uacUGGgUCCGGUCCgauUGGACGGa -5'
33302 3' -59.6 NC_007605.1 + 58707 0.69 0.561847
Target:  5'- -gGACCUcGGCCAGGgaCUGAacaaCUGCCg -3'
miRNA:   3'- uaCUGGGuCCGGUCC--GAUUg---GACGGa -5'
33302 3' -59.6 NC_007605.1 + 127385 0.7 0.493526
Target:  5'- -cGGCCCAGGCCcagacgucGGCgGAUgUGCCUc -3'
miRNA:   3'- uaCUGGGUCCGGu-------CCGaUUGgACGGA- -5'
33302 3' -59.6 NC_007605.1 + 34389 0.7 0.474689
Target:  5'- -aGACCCGGGUCuGGggGGCCUGUg- -3'
miRNA:   3'- uaCUGGGUCCGGuCCgaUUGGACGga -5'
33302 3' -59.6 NC_007605.1 + 12907 0.7 0.474689
Target:  5'- -aGACCCGGGUCuGGggGGCCUGUg- -3'
miRNA:   3'- uaCUGGGUCCGGuCCgaUUGGACGga -5'
33302 3' -59.6 NC_007605.1 + 107973 0.7 0.512697
Target:  5'- -gGGCCUAGGCCucGGCUcuGACCUaGCUc -3'
miRNA:   3'- uaCUGGGUCCGGu-CCGA--UUGGA-CGGa -5'
33302 3' -59.6 NC_007605.1 + 34113 0.7 0.484064
Target:  5'- -aGACCCGGGCUcGGC-AGCCcaGCCg -3'
miRNA:   3'- uaCUGGGUCCGGuCCGaUUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 28251 0.7 0.474689
Target:  5'- -aGACCCGGGUCuGGggGGCCUGUg- -3'
miRNA:   3'- uaCUGGGUCCGGuCCgaUUGGACGga -5'
33302 3' -59.6 NC_007605.1 + 31320 0.7 0.474689
Target:  5'- -aGACCCGGGUCuGGggGGCCUGUg- -3'
miRNA:   3'- uaCUGGGUCCGGuCCgaUUGGACGga -5'
33302 3' -59.6 NC_007605.1 + 25000 0.7 0.503072
Target:  5'- -aGACCCGGGUCucGGCcAGCCgaGCCg -3'
miRNA:   3'- uaCUGGGUCCGGu-CCGaUUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 18863 0.7 0.503072
Target:  5'- -aGACCCGGGUCucGGCcAGCCgaGCCg -3'
miRNA:   3'- uaCUGGGUCCGGu-CCGaUUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 15794 0.7 0.503072
Target:  5'- -aGACCCGGGUCucGGCcAGCCgaGCCg -3'
miRNA:   3'- uaCUGGGUCCGGu-CCGaUUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 12725 0.7 0.503072
Target:  5'- -aGACCCGGGUCucGGCcAGCCgaGCCg -3'
miRNA:   3'- uaCUGGGUCCGGu-CCGaUUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 24462 0.7 0.503072
Target:  5'- ---cCCCGGGCCAGGCcaccuuaGACCcgGCCa -3'
miRNA:   3'- uacuGGGUCCGGUCCGa------UUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 30600 0.7 0.503072
Target:  5'- ---cCCCGGGCCAGGCcaccuuaGACCcgGCCa -3'
miRNA:   3'- uacuGGGUCCGGUCCGa------UUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 33669 0.7 0.503072
Target:  5'- ---cCCCGGGCCAGGCcaccuuaGACCcgGCCa -3'
miRNA:   3'- uacuGGGUCCGGUCCGa------UUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 3666 0.7 0.512697
Target:  5'- --aGCCCGGGgUAGGUccccugGACCUGCCg -3'
miRNA:   3'- uacUGGGUCCgGUCCGa-----UUGGACGGa -5'
33302 3' -59.6 NC_007605.1 + 28069 0.7 0.503072
Target:  5'- -aGACCCGGGUCucGGCcAGCCgaGCCg -3'
miRNA:   3'- uaCUGGGUCCGGu-CCGaUUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 27531 0.7 0.503072
Target:  5'- ---cCCCGGGCCAGGCcaccuuaGACCcgGCCa -3'
miRNA:   3'- uacuGGGUCCGGUCCGa------UUGGa-CGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.