Results 81 - 100 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 29230 | 0.69 | 0.526297 |
Target: 5'- -aGGCUCAGGCCAuGCgcgcccugucaccaGGCCUGCCa -3' miRNA: 3'- uaCUGGGUCCGGUcCGa-------------UUGGACGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 26161 | 0.69 | 0.526297 |
Target: 5'- -aGGCUCAGGCCAuGCgcgcccugucaccaGGCCUGCCa -3' miRNA: 3'- uaCUGGGUCCGGUcCGa-------------UUGGACGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 23092 | 0.69 | 0.526297 |
Target: 5'- -aGGCUCAGGCCAuGCgcgcccugucaccaGGCCUGCCa -3' miRNA: 3'- uaCUGGGUCCGGUcCGa-------------UUGGACGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 20023 | 0.69 | 0.526297 |
Target: 5'- -aGGCUCAGGCCAuGCgcgcccugucaccaGGCCUGCCa -3' miRNA: 3'- uaCUGGGUCCGGUcCGa-------------UUGGACGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 31146 | 0.69 | 0.532167 |
Target: 5'- ---cCCCGGGCCuAGGCcGACCcucUGCCUc -3' miRNA: 3'- uacuGGGUCCGG-UCCGaUUGG---ACGGA- -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 34215 | 0.69 | 0.532167 |
Target: 5'- ---cCCCGGGCCuAGGCcGACCcucUGCCUc -3' miRNA: 3'- uacuGGGUCCGG-UCCGaUUGG---ACGGA- -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 121917 | 0.69 | 0.542003 |
Target: 5'- cAUGACUCcGGCCAGGgUGGCg-GCCa -3' miRNA: 3'- -UACUGGGuCCGGUCCgAUUGgaCGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 25009 | 0.69 | 0.532167 |
Target: 5'- ---cCCCGGGCCuAGGCcGACCcucUGCCUc -3' miRNA: 3'- uacuGGGUCCGG-UCCGaUUGG---ACGGA- -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 21940 | 0.69 | 0.532167 |
Target: 5'- ---cCCCGGGCCuAGGCcGACCcucUGCCUc -3' miRNA: 3'- uacuGGGUCCGG-UCCGaUUGG---ACGGA- -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 15802 | 0.69 | 0.532167 |
Target: 5'- ---cCCCGGGCCuAGGCcGACCcucUGCCUc -3' miRNA: 3'- uacuGGGUCCGG-UCCGaUUGG---ACGGA- -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 33910 | 0.69 | 0.522397 |
Target: 5'- -gGGCCgGucGGCUGGGCUGGCCgGCCc -3' miRNA: 3'- uaCUGGgU--CCGGUCCGAUUGGaCGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 12733 | 0.69 | 0.532167 |
Target: 5'- ---cCCCGGGCCuAGGCcGACCcucUGCCUc -3' miRNA: 3'- uacuGGGUCCGG-UCCGaUUGG---ACGGA- -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 18871 | 0.69 | 0.532167 |
Target: 5'- ---cCCCGGGCCuAGGCcGACCcucUGCCUc -3' miRNA: 3'- uacuGGGUCCGG-UCCGaUUGG---ACGGA- -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 28078 | 0.69 | 0.532167 |
Target: 5'- ---cCCCGGGCCuAGGCcGACCcucUGCCUc -3' miRNA: 3'- uacuGGGUCCGG-UCCGaUUGG---ACGGA- -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 154500 | 0.69 | 0.551898 |
Target: 5'- cAUGAUaacgCCGGGagaagagcaCAGGCUAGCCgGCCUg -3' miRNA: 3'- -UACUG----GGUCCg--------GUCCGAUUGGaCGGA- -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 161033 | 0.69 | 0.551898 |
Target: 5'- -aGGCCUcGGCCGGGCUG--CUGCUg -3' miRNA: 3'- uaCUGGGuCCGGUCCGAUugGACGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 4386 | 0.68 | 0.581883 |
Target: 5'- -cGACggGGGCCuGG-UGACCUGCCUg -3' miRNA: 3'- uaCUGggUCCGGuCCgAUUGGACGGA- -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 64129 | 0.68 | 0.582888 |
Target: 5'- -aGACCCcgaggcugauguccuGGCCGGGC--GCCUGCUc -3' miRNA: 3'- uaCUGGGu--------------CCGGUCCGauUGGACGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 4054 | 0.68 | 0.60206 |
Target: 5'- cGUGGCCUGGGCguGaaGCUGACCUuuggcucgGCCUc -3' miRNA: 3'- -UACUGGGUCCGguC--CGAUUGGA--------CGGA- -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 48004 | 0.68 | 0.622325 |
Target: 5'- -gGGCCguGGCCAGGgguuACCgagGCCUc -3' miRNA: 3'- uaCUGGguCCGGUCCgau-UGGa--CGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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