miRNA display CGI


Results 121 - 140 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33302 3' -59.6 NC_007605.1 + 33704 0.67 0.672979
Target:  5'- -aGGCCgGGGuCCAGGggGACCcgaggGCCUu -3'
miRNA:   3'- uaCUGGgUCC-GGUCCgaUUGGa----CGGA- -5'
33302 3' -59.6 NC_007605.1 + 60287 0.67 0.672979
Target:  5'- -cGGCCguGGCCAgGGCccACCUGgCg -3'
miRNA:   3'- uaCUGGguCCGGU-CCGauUGGACgGa -5'
33302 3' -59.6 NC_007605.1 + 158829 0.67 0.683044
Target:  5'- -gGGCCU-GGCCgGGGCUGACCgcguccGCCc -3'
miRNA:   3'- uaCUGGGuCCGG-UCCGAUUGGa-----CGGa -5'
33302 3' -59.6 NC_007605.1 + 153533 0.67 0.683044
Target:  5'- aAUGACUCuuggaaGGGCCggugggagaggAGGCUGGCC-GCCUc -3'
miRNA:   3'- -UACUGGG------UCCGG-----------UCCGAUUGGaCGGA- -5'
33302 3' -59.6 NC_007605.1 + 40345 0.67 0.642619
Target:  5'- -gGACCCuGGuGCCAGGCaggGACCccgcGCCa -3'
miRNA:   3'- uaCUGGG-UC-CGGUCCGa--UUGGa---CGGa -5'
33302 3' -59.6 NC_007605.1 + 12427 0.67 0.642619
Target:  5'- -gGGCCgGucGGCUGGGCUGGCCgaGCCc -3'
miRNA:   3'- uaCUGGgU--CCGGUCCGAUUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 15496 0.67 0.642619
Target:  5'- -gGGCCgGucGGCUGGGCUGGCCgaGCCc -3'
miRNA:   3'- uaCUGGgU--CCGGUCCGAUUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 30635 0.67 0.672979
Target:  5'- -aGGCCgGGGuCCAGGggGACCcgaggGCCUu -3'
miRNA:   3'- uaCUGGgUCC-GGUCCgaUUGGa----CGGA- -5'
33302 3' -59.6 NC_007605.1 + 18565 0.67 0.642619
Target:  5'- -gGGCCgGucGGCUGGGCUGGCCgaGCCc -3'
miRNA:   3'- uaCUGGgU--CCGGUCCGAUUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 21634 0.67 0.642619
Target:  5'- -gGGCCgGucGGCUGGGCUGGCCgaGCCc -3'
miRNA:   3'- uaCUGGgU--CCGGUCCGAUUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 27772 0.67 0.642619
Target:  5'- -gGGCCgGucGGCUGGGCUGGCCgaGCCc -3'
miRNA:   3'- uaCUGGgU--CCGGUCCGAUUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 30841 0.67 0.642619
Target:  5'- -gGGCCgGucGGCUGGGCUGGCCgaGCCc -3'
miRNA:   3'- uaCUGGgU--CCGGUCCGAUUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 48729 0.67 0.672979
Target:  5'- cGUGACCagaAGGagaagCAuGuGCUGACCUGCCa -3'
miRNA:   3'- -UACUGGg--UCCg----GU-C-CGAUUGGACGGa -5'
33302 3' -59.6 NC_007605.1 + 24703 0.67 0.642619
Target:  5'- -gGGCCgGucGGCUGGGCUGGCCgaGCCc -3'
miRNA:   3'- uaCUGGgU--CCGGUCCGAUUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 59742 0.67 0.682039
Target:  5'- -gGACCCGGGCCGugcgagcaaaggcGGCgagAACCgagggGCUUc -3'
miRNA:   3'- uaCUGGGUCCGGU-------------CCGa--UUGGa----CGGA- -5'
33302 3' -59.6 NC_007605.1 + 75340 0.67 0.672979
Target:  5'- --cACCCAuGGCCAGGCUcggcACCU-CCUc -3'
miRNA:   3'- uacUGGGU-CCGGUCCGAu---UGGAcGGA- -5'
33302 3' -59.6 NC_007605.1 + 99988 0.66 0.750899
Target:  5'- cAUG-CCCAGGCUaauggucaagaugAGGCaggcuucgUGugCUGCCUg -3'
miRNA:   3'- -UACuGGGUCCGG-------------UCCG--------AUugGACGGA- -5'
33302 3' -59.6 NC_007605.1 + 160297 0.66 0.750899
Target:  5'- -aGAUCCAGGgcccguuCCAGGCUcuCCaGCCc -3'
miRNA:   3'- uaCUGGGUCC-------GGUCCGAuuGGaCGGa -5'
33302 3' -59.6 NC_007605.1 + 21932 0.66 0.751854
Target:  5'- -aGACCCGGGUCucGGCcAGCCgagcgaccgGCCc -3'
miRNA:   3'- uaCUGGGUCCGGu-CCGaUUGGa--------CGGa -5'
33302 3' -59.6 NC_007605.1 + 55770 0.66 0.751854
Target:  5'- -aGGCCaCAccGGCCAGGCccAACaUUGCCUc -3'
miRNA:   3'- uaCUGG-GU--CCGGUCCGa-UUG-GACGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.