miRNA display CGI


Results 81 - 100 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33302 3' -59.6 NC_007605.1 + 62170 0.69 0.532167
Target:  5'- cAUGGCCUugauguccgcGGCCguGGGCUGAcCCUGCCc -3'
miRNA:   3'- -UACUGGGu---------CCGG--UCCGAUU-GGACGGa -5'
33302 3' -59.6 NC_007605.1 + 53838 0.69 0.532167
Target:  5'- --uGCCCGGGCCAGGgcGGCCUcgaggggaGCCUg -3'
miRNA:   3'- uacUGGGUCCGGUCCgaUUGGA--------CGGA- -5'
33302 3' -59.6 NC_007605.1 + 28078 0.69 0.532167
Target:  5'- ---cCCCGGGCCuAGGCcGACCcucUGCCUc -3'
miRNA:   3'- uacuGGGUCCGG-UCCGaUUGG---ACGGA- -5'
33302 3' -59.6 NC_007605.1 + 25009 0.69 0.532167
Target:  5'- ---cCCCGGGCCuAGGCcGACCcucUGCCUc -3'
miRNA:   3'- uacuGGGUCCGG-UCCGaUUGG---ACGGA- -5'
33302 3' -59.6 NC_007605.1 + 31146 0.69 0.532167
Target:  5'- ---cCCCGGGCCuAGGCcGACCcucUGCCUc -3'
miRNA:   3'- uacuGGGUCCGG-UCCGaUUGG---ACGGA- -5'
33302 3' -59.6 NC_007605.1 + 34215 0.69 0.532167
Target:  5'- ---cCCCGGGCCuAGGCcGACCcucUGCCUc -3'
miRNA:   3'- uacuGGGUCCGG-UCCGaUUGG---ACGGA- -5'
33302 3' -59.6 NC_007605.1 + 15802 0.69 0.532167
Target:  5'- ---cCCCGGGCCuAGGCcGACCcucUGCCUc -3'
miRNA:   3'- uacuGGGUCCGG-UCCGaUUGG---ACGGA- -5'
33302 3' -59.6 NC_007605.1 + 21940 0.69 0.532167
Target:  5'- ---cCCCGGGCCuAGGCcGACCcucUGCCUc -3'
miRNA:   3'- uacuGGGUCCGG-UCCGaUUGG---ACGGA- -5'
33302 3' -59.6 NC_007605.1 + 12733 0.69 0.532167
Target:  5'- ---cCCCGGGCCuAGGCcGACCcucUGCCUc -3'
miRNA:   3'- uacuGGGUCCGG-UCCGaUUGG---ACGGA- -5'
33302 3' -59.6 NC_007605.1 + 18871 0.69 0.532167
Target:  5'- ---cCCCGGGCCuAGGCcGACCcucUGCCUc -3'
miRNA:   3'- uacuGGGUCCGG-UCCGaUUGG---ACGGA- -5'
33302 3' -59.6 NC_007605.1 + 164922 0.69 0.542003
Target:  5'- uGUGGCCgCcGGCCAGGCUGucACC-GCUUu -3'
miRNA:   3'- -UACUGG-GuCCGGUCCGAU--UGGaCGGA- -5'
33302 3' -59.6 NC_007605.1 + 61262 0.69 0.542003
Target:  5'- --aGCCgGGGCCGGG---GCCUGCCa -3'
miRNA:   3'- uacUGGgUCCGGUCCgauUGGACGGa -5'
33302 3' -59.6 NC_007605.1 + 121917 0.69 0.542003
Target:  5'- cAUGACUCcGGCCAGGgUGGCg-GCCa -3'
miRNA:   3'- -UACUGGGuCCGGUCCgAUUGgaCGGa -5'
33302 3' -59.6 NC_007605.1 + 161033 0.69 0.551898
Target:  5'- -aGGCCUcGGCCGGGCUG--CUGCUg -3'
miRNA:   3'- uaCUGGGuCCGGUCCGAUugGACGGa -5'
33302 3' -59.6 NC_007605.1 + 154500 0.69 0.551898
Target:  5'- cAUGAUaacgCCGGGagaagagcaCAGGCUAGCCgGCCUg -3'
miRNA:   3'- -UACUG----GGUCCg--------GUCCGAUUGGaCGGA- -5'
33302 3' -59.6 NC_007605.1 + 58707 0.69 0.561847
Target:  5'- -gGACCUcGGCCAGGgaCUGAacaaCUGCCg -3'
miRNA:   3'- uaCUGGGuCCGGUCC--GAUUg---GACGGa -5'
33302 3' -59.6 NC_007605.1 + 73625 0.68 0.580877
Target:  5'- -gGGCCUGGGCCGGGCUcagugugGACgUGgCCc -3'
miRNA:   3'- uaCUGGGUCCGGUCCGA-------UUGgAC-GGa -5'
33302 3' -59.6 NC_007605.1 + 4386 0.68 0.581883
Target:  5'- -cGACggGGGCCuGG-UGACCUGCCUg -3'
miRNA:   3'- uaCUGggUCCGGuCCgAUUGGACGGA- -5'
33302 3' -59.6 NC_007605.1 + 64129 0.68 0.582888
Target:  5'- -aGACCCcgaggcugauguccuGGCCGGGC--GCCUGCUc -3'
miRNA:   3'- uaCUGGGu--------------CCGGUCCGauUGGACGGa -5'
33302 3' -59.6 NC_007605.1 + 75193 0.68 0.585908
Target:  5'- cGUGgccACCUucuccaucuccaucaGGGCCAGGCUGucGCCaGCCUg -3'
miRNA:   3'- -UAC---UGGG---------------UCCGGUCCGAU--UGGaCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.