Results 41 - 60 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 24703 | 0.67 | 0.642619 |
Target: 5'- -gGGCCgGucGGCUGGGCUGGCCgaGCCc -3' miRNA: 3'- uaCUGGgU--CCGGUCCGAUUGGa-CGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 18565 | 0.67 | 0.642619 |
Target: 5'- -gGGCCgGucGGCUGGGCUGGCCgaGCCc -3' miRNA: 3'- uaCUGGgU--CCGGUCCGAUUGGa-CGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 21634 | 0.67 | 0.642619 |
Target: 5'- -gGGCCgGucGGCUGGGCUGGCCgaGCCc -3' miRNA: 3'- uaCUGGgU--CCGGUCCGAUUGGa-CGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 30841 | 0.67 | 0.642619 |
Target: 5'- -gGGCCgGucGGCUGGGCUGGCCgaGCCc -3' miRNA: 3'- uaCUGGgU--CCGGUCCGAUUGGa-CGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 27772 | 0.67 | 0.642619 |
Target: 5'- -gGGCCgGucGGCUGGGCUGGCCgaGCCc -3' miRNA: 3'- uaCUGGgU--CCGGUCCGAUUGGa-CGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 82861 | 0.68 | 0.636532 |
Target: 5'- uUGGCCaccuuccccuugaaCAGGCCacucggggguccgaGGGCggGGCCUGCCa -3' miRNA: 3'- uACUGG--------------GUCCGG--------------UCCGa-UUGGACGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 122718 | 0.68 | 0.632472 |
Target: 5'- -aGACCCuGGCCuacaacGGGCcAGCCUucaGCCa -3' miRNA: 3'- uaCUGGGuCCGG------UCCGaUUGGA---CGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 48004 | 0.68 | 0.622325 |
Target: 5'- -gGGCCguGGCCAGGgguuACCgagGCCUc -3' miRNA: 3'- uaCUGGguCCGGUCCgau-UGGa--CGGA- -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 91613 | 0.68 | 0.622325 |
Target: 5'- -gGAUCCccguGGGCCAaccGGCcccuGCCUGCCUc -3' miRNA: 3'- uaCUGGG----UCCGGU---CCGau--UGGACGGA- -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 63493 | 0.68 | 0.622325 |
Target: 5'- -cGACCCGGGC--GGCUAcACCccgGCCg -3' miRNA: 3'- uaCUGGGUCCGguCCGAU-UGGa--CGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 163232 | 0.68 | 0.612185 |
Target: 5'- cAUGACCCAcGGCCuGGggAcCCUGCa- -3' miRNA: 3'- -UACUGGGU-CCGGuCCgaUuGGACGga -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 60475 | 0.68 | 0.612185 |
Target: 5'- -gGGCCCuGGCCAcGGCcGACacgGCCa -3' miRNA: 3'- uaCUGGGuCCGGU-CCGaUUGga-CGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 82753 | 0.68 | 0.60206 |
Target: 5'- -aGGCCacucggGGGCCugaGGGCagGGCCUGCCa -3' miRNA: 3'- uaCUGGg-----UCCGG---UCCGa-UUGGACGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 4054 | 0.68 | 0.60206 |
Target: 5'- cGUGGCCUGGGCguGaaGCUGACCUuuggcucgGCCUc -3' miRNA: 3'- -UACUGGGUCCGguC--CGAUUGGA--------CGGA- -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 162241 | 0.68 | 0.60206 |
Target: 5'- -cGGCCCugcaGGGCCGGGUguacGGCCggcggcUGCCUg -3' miRNA: 3'- uaCUGGG----UCCGGUCCGa---UUGG------ACGGA- -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 75193 | 0.68 | 0.585908 |
Target: 5'- cGUGgccACCUucuccaucuccaucaGGGCCAGGCUGucGCCaGCCUg -3' miRNA: 3'- -UAC---UGGG---------------UCCGGUCCGAU--UGGaCGGA- -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 64129 | 0.68 | 0.582888 |
Target: 5'- -aGACCCcgaggcugauguccuGGCCGGGC--GCCUGCUc -3' miRNA: 3'- uaCUGGGu--------------CCGGUCCGauUGGACGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 4386 | 0.68 | 0.581883 |
Target: 5'- -cGACggGGGCCuGG-UGACCUGCCUg -3' miRNA: 3'- uaCUGggUCCGGuCCgAUUGGACGGA- -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 73625 | 0.68 | 0.580877 |
Target: 5'- -gGGCCUGGGCCGGGCUcagugugGACgUGgCCc -3' miRNA: 3'- uaCUGGGUCCGGUCCGA-------UUGgAC-GGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 58707 | 0.69 | 0.561847 |
Target: 5'- -gGACCUcGGCCAGGgaCUGAacaaCUGCCg -3' miRNA: 3'- uaCUGGGuCCGGUCC--GAUUg---GACGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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