miRNA display CGI


Results 61 - 80 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33302 3' -59.6 NC_007605.1 + 27283 0.74 0.282545
Target:  5'- -aGACCCGGGCuuCAGGC---CCUGCCUc -3'
miRNA:   3'- uaCUGGGUCCG--GUCCGauuGGACGGA- -5'
33302 3' -59.6 NC_007605.1 + 27531 0.7 0.503072
Target:  5'- ---cCCCGGGCCAGGCcaccuuaGACCcgGCCa -3'
miRNA:   3'- uacuGGGUCCGGUCCGa------UUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 27566 0.67 0.672979
Target:  5'- -aGGCCgGGGuCCAGGggGACCcgaggGCCUu -3'
miRNA:   3'- uaCUGGgUCC-GGUCCgaUUGGa----CGGA- -5'
33302 3' -59.6 NC_007605.1 + 27772 0.67 0.642619
Target:  5'- -gGGCCgGucGGCUGGGCUGGCCgaGCCc -3'
miRNA:   3'- uaCUGGgU--CCGGUCCGAUUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 27976 0.71 0.429261
Target:  5'- -aGACCCGGGCUcGGCcAGCCcaGCCg -3'
miRNA:   3'- uaCUGGGUCCGGuCCGaUUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 28069 0.7 0.503072
Target:  5'- -aGACCCGGGUCucGGCcAGCCgaGCCg -3'
miRNA:   3'- uaCUGGGUCCGGu-CCGaUUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 28078 0.69 0.532167
Target:  5'- ---cCCCGGGCCuAGGCcGACCcucUGCCUc -3'
miRNA:   3'- uacuGGGUCCGG-UCCGaUUGG---ACGGA- -5'
33302 3' -59.6 NC_007605.1 + 28251 0.7 0.474689
Target:  5'- -aGACCCGGGUCuGGggGGCCUGUg- -3'
miRNA:   3'- uaCUGGGUCCGGuCCgaUUGGACGga -5'
33302 3' -59.6 NC_007605.1 + 29019 0.72 0.381555
Target:  5'- uGUGACCCuuGGGCCuGGCUccccAuagacucccauguaaGCCUGCCUc -3'
miRNA:   3'- -UACUGGG--UCCGGuCCGA----U---------------UGGACGGA- -5'
33302 3' -59.6 NC_007605.1 + 29230 0.69 0.526297
Target:  5'- -aGGCUCAGGCCAuGCgcgcccugucaccaGGCCUGCCa -3'
miRNA:   3'- uaCUGGGUCCGGUcCGa-------------UUGGACGGa -5'
33302 3' -59.6 NC_007605.1 + 30103 0.78 0.161428
Target:  5'- -gGGCCCGGGCCGGGUUGGuCCaggGCCUu -3'
miRNA:   3'- uaCUGGGUCCGGUCCGAUU-GGa--CGGA- -5'
33302 3' -59.6 NC_007605.1 + 30352 0.74 0.282545
Target:  5'- -aGACCCGGGCuuCAGGC---CCUGCCUc -3'
miRNA:   3'- uaCUGGGUCCG--GUCCGauuGGACGGA- -5'
33302 3' -59.6 NC_007605.1 + 30600 0.7 0.503072
Target:  5'- ---cCCCGGGCCAGGCcaccuuaGACCcgGCCa -3'
miRNA:   3'- uacuGGGUCCGGUCCGa------UUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 30635 0.67 0.672979
Target:  5'- -aGGCCgGGGuCCAGGggGACCcgaggGCCUu -3'
miRNA:   3'- uaCUGGgUCC-GGUCCgaUUGGa----CGGA- -5'
33302 3' -59.6 NC_007605.1 + 30841 0.67 0.642619
Target:  5'- -gGGCCgGucGGCUGGGCUGGCCgaGCCc -3'
miRNA:   3'- uaCUGGgU--CCGGUCCGAUUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 31045 0.71 0.429261
Target:  5'- -aGACCCGGGCUcGGCcAGCCcaGCCg -3'
miRNA:   3'- uaCUGGGUCCGGuCCGaUUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 31138 0.7 0.503072
Target:  5'- -aGACCCGGGUCucGGCcAGCCgaGCCg -3'
miRNA:   3'- uaCUGGGUCCGGu-CCGaUUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 31146 0.69 0.532167
Target:  5'- ---cCCCGGGCCuAGGCcGACCcucUGCCUc -3'
miRNA:   3'- uacuGGGUCCGG-UCCGaUUGG---ACGGA- -5'
33302 3' -59.6 NC_007605.1 + 31320 0.7 0.474689
Target:  5'- -aGACCCGGGUCuGGggGGCCUGUg- -3'
miRNA:   3'- uaCUGGGUCCGGuCCgaUUGGACGga -5'
33302 3' -59.6 NC_007605.1 + 32088 0.72 0.381555
Target:  5'- uGUGACCCuuGGGCCuGGCUccccAuagacucccauguaaGCCUGCCUc -3'
miRNA:   3'- -UACUGGG--UCCGGuCCGA----U---------------UGGACGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.