miRNA display CGI


Results 101 - 120 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33302 3' -59.6 NC_007605.1 + 54415 1.05 0.00225
Target:  5'- aAUGACCCAGGCCAGGCUAACCUGCCUc -3'
miRNA:   3'- -UACUGGGUCCGGUCCGAUUGGACGGA- -5'
33302 3' -59.6 NC_007605.1 + 55770 0.66 0.751854
Target:  5'- -aGGCCaCAccGGCCAGGCccAACaUUGCCUc -3'
miRNA:   3'- uaCUGG-GU--CCGGUCCGa-UUG-GACGGA- -5'
33302 3' -59.6 NC_007605.1 + 58707 0.69 0.561847
Target:  5'- -gGACCUcGGCCAGGgaCUGAacaaCUGCCg -3'
miRNA:   3'- uaCUGGGuCCGGUCC--GAUUg---GACGGa -5'
33302 3' -59.6 NC_007605.1 + 59742 0.67 0.682039
Target:  5'- -gGACCCGGGCCGugcgagcaaaggcGGCgagAACCgagggGCUUc -3'
miRNA:   3'- uaCUGGGUCCGGU-------------CCGa--UUGGa----CGGA- -5'
33302 3' -59.6 NC_007605.1 + 60287 0.67 0.672979
Target:  5'- -cGGCCguGGCCAgGGCccACCUGgCg -3'
miRNA:   3'- uaCUGGguCCGGU-CCGauUGGACgGa -5'
33302 3' -59.6 NC_007605.1 + 60475 0.68 0.612185
Target:  5'- -gGGCCCuGGCCAcGGCcGACacgGCCa -3'
miRNA:   3'- uaCUGGGuCCGGU-CCGaUUGga-CGGa -5'
33302 3' -59.6 NC_007605.1 + 61262 0.69 0.542003
Target:  5'- --aGCCgGGGCCGGG---GCCUGCCa -3'
miRNA:   3'- uacUGGgUCCGGUCCgauUGGACGGa -5'
33302 3' -59.6 NC_007605.1 + 61712 0.71 0.429261
Target:  5'- uGUGGCCCGGGCggccuaccugCGGGCggaGGCCgagGCCg -3'
miRNA:   3'- -UACUGGGUCCG----------GUCCGa--UUGGa--CGGa -5'
33302 3' -59.6 NC_007605.1 + 62170 0.69 0.532167
Target:  5'- cAUGGCCUugauguccgcGGCCguGGGCUGAcCCUGCCc -3'
miRNA:   3'- -UACUGGGu---------CCGG--UCCGAUU-GGACGGa -5'
33302 3' -59.6 NC_007605.1 + 63493 0.68 0.622325
Target:  5'- -cGACCCGGGC--GGCUAcACCccgGCCg -3'
miRNA:   3'- uaCUGGGUCCGguCCGAU-UGGa--CGGa -5'
33302 3' -59.6 NC_007605.1 + 64129 0.68 0.582888
Target:  5'- -aGACCCcgaggcugauguccuGGCCGGGC--GCCUGCUc -3'
miRNA:   3'- uaCUGGGu--------------CCGGUCCGauUGGACGGa -5'
33302 3' -59.6 NC_007605.1 + 64651 0.72 0.406672
Target:  5'- cGUGACCCAGGCCcucuauaggcaccugGGGCgcuACCUcuuucagcgaGCCg -3'
miRNA:   3'- -UACUGGGUCCGG---------------UCCGau-UGGA----------CGGa -5'
33302 3' -59.6 NC_007605.1 + 65508 0.66 0.751854
Target:  5'- uAUGGCCUccauGGGCCucgGGGUgcagGGCCUGgCCg -3'
miRNA:   3'- -UACUGGG----UCCGG---UCCGa---UUGGAC-GGa -5'
33302 3' -59.6 NC_007605.1 + 67690 0.67 0.693068
Target:  5'- cGUGGCCaacgcaggCAcGGCCGGGCUAAUCaGCUUc -3'
miRNA:   3'- -UACUGG--------GU-CCGGUCCGAUUGGaCGGA- -5'
33302 3' -59.6 NC_007605.1 + 73315 0.66 0.712958
Target:  5'- cUGGCCCcGGCagguGGcCUGGCCgGCCa -3'
miRNA:   3'- uACUGGGuCCGgu--CC-GAUUGGaCGGa -5'
33302 3' -59.6 NC_007605.1 + 73515 0.73 0.354367
Target:  5'- uUGGCC--GGCCAGGCc-ACCUGCCg -3'
miRNA:   3'- uACUGGguCCGGUCCGauUGGACGGa -5'
33302 3' -59.6 NC_007605.1 + 73625 0.68 0.580877
Target:  5'- -gGGCCUGGGCCGGGCUcagugugGACgUGgCCc -3'
miRNA:   3'- uaCUGGGUCCGGUCCGA-------UUGgAC-GGa -5'
33302 3' -59.6 NC_007605.1 + 75193 0.68 0.585908
Target:  5'- cGUGgccACCUucuccaucuccaucaGGGCCAGGCUGucGCCaGCCUg -3'
miRNA:   3'- -UAC---UGGG---------------UCCGGUCCGAU--UGGaCGGA- -5'
33302 3' -59.6 NC_007605.1 + 75340 0.67 0.672979
Target:  5'- --cACCCAuGGCCAGGCUcggcACCU-CCUc -3'
miRNA:   3'- uacUGGGU-CCGGUCCGAu---UGGAcGGA- -5'
33302 3' -59.6 NC_007605.1 + 75577 0.76 0.239468
Target:  5'- --uACCCugcauGGCCAGGCccGACCUGCCa -3'
miRNA:   3'- uacUGGGu----CCGGUCCGa-UUGGACGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.