miRNA display CGI


Results 121 - 140 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33302 3' -59.6 NC_007605.1 + 82753 0.68 0.60206
Target:  5'- -aGGCCacucggGGGCCugaGGGCagGGCCUGCCa -3'
miRNA:   3'- uaCUGGg-----UCCGG---UCCGa-UUGGACGGa -5'
33302 3' -59.6 NC_007605.1 + 82861 0.68 0.636532
Target:  5'- uUGGCCaccuuccccuugaaCAGGCCacucggggguccgaGGGCggGGCCUGCCa -3'
miRNA:   3'- uACUGG--------------GUCCGG--------------UCCGa-UUGGACGGa -5'
33302 3' -59.6 NC_007605.1 + 84635 0.66 0.732577
Target:  5'- aGUGGgCCgacgGGGCCAGGCU--CUUGCUg -3'
miRNA:   3'- -UACUgGG----UCCGGUCCGAuuGGACGGa -5'
33302 3' -59.6 NC_007605.1 + 84681 0.66 0.699059
Target:  5'- -gGGCCCAGGCaaagguugccauGGCUccAGCCgaGCCUg -3'
miRNA:   3'- uaCUGGGUCCGgu----------CCGA--UUGGa-CGGA- -5'
33302 3' -59.6 NC_007605.1 + 91613 0.68 0.622325
Target:  5'- -gGAUCCccguGGGCCAaccGGCcccuGCCUGCCUc -3'
miRNA:   3'- uaCUGGG----UCCGGU---CCGau--UGGACGGA- -5'
33302 3' -59.6 NC_007605.1 + 99988 0.66 0.750899
Target:  5'- cAUG-CCCAGGCUaauggucaagaugAGGCaggcuucgUGugCUGCCUg -3'
miRNA:   3'- -UACuGGGUCCGG-------------UCCG--------AUugGACGGA- -5'
33302 3' -59.6 NC_007605.1 + 100832 0.71 0.420485
Target:  5'- -aGACCCuGGUCGGGCUu-CCggGCCUc -3'
miRNA:   3'- uaCUGGGuCCGGUCCGAuuGGa-CGGA- -5'
33302 3' -59.6 NC_007605.1 + 105591 0.67 0.693068
Target:  5'- -aGGCCCAGGa-GGGCg--UCUGCCa -3'
miRNA:   3'- uaCUGGGUCCggUCCGauuGGACGGa -5'
33302 3' -59.6 NC_007605.1 + 107973 0.7 0.512697
Target:  5'- -gGGCCUAGGCCucGGCUcuGACCUaGCUc -3'
miRNA:   3'- uaCUGGGUCCGGu-CCGA--UUGGA-CGGa -5'
33302 3' -59.6 NC_007605.1 + 121917 0.69 0.542003
Target:  5'- cAUGACUCcGGCCAGGgUGGCg-GCCa -3'
miRNA:   3'- -UACUGGGuCCGGUCCgAUUGgaCGGa -5'
33302 3' -59.6 NC_007605.1 + 122718 0.68 0.632472
Target:  5'- -aGACCCuGGCCuacaacGGGCcAGCCUucaGCCa -3'
miRNA:   3'- uaCUGGGuCCGG------UCCGaUUGGA---CGGa -5'
33302 3' -59.6 NC_007605.1 + 122946 0.79 0.145861
Target:  5'- cUGACCC-GGCCAGGCgcaucagGGCCUGCUc -3'
miRNA:   3'- uACUGGGuCCGGUCCGa------UUGGACGGa -5'
33302 3' -59.6 NC_007605.1 + 127385 0.7 0.493526
Target:  5'- -cGGCCCAGGCCcagacgucGGCgGAUgUGCCUc -3'
miRNA:   3'- uaCUGGGUCCGGu-------CCGaUUGgACGGA- -5'
33302 3' -59.6 NC_007605.1 + 134811 0.66 0.742263
Target:  5'- -cGugCCAGGCCgccaugcucaGGGCcacGGCgUGCCa -3'
miRNA:   3'- uaCugGGUCCGG----------UCCGa--UUGgACGGa -5'
33302 3' -59.6 NC_007605.1 + 135070 0.66 0.722806
Target:  5'- cUGGCUCAGGUCcGGCgc-CCUGCg- -3'
miRNA:   3'- uACUGGGUCCGGuCCGauuGGACGga -5'
33302 3' -59.6 NC_007605.1 + 143160 0.67 0.642619
Target:  5'- -gGACCCuGGuGCCAGGCaggGACCccgcGCCa -3'
miRNA:   3'- uaCUGGG-UC-CGGUCCGa--UUGGa---CGGa -5'
33302 3' -59.6 NC_007605.1 + 150717 0.66 0.703043
Target:  5'- cGUGACau-GGCCAGGCcugguGCCaGCCg -3'
miRNA:   3'- -UACUGgguCCGGUCCGau---UGGaCGGa -5'
33302 3' -59.6 NC_007605.1 + 153533 0.67 0.683044
Target:  5'- aAUGACUCuuggaaGGGCCggugggagaggAGGCUGGCC-GCCUc -3'
miRNA:   3'- -UACUGGG------UCCGG-----------UCCGAUUGGaCGGA- -5'
33302 3' -59.6 NC_007605.1 + 154285 0.74 0.309806
Target:  5'- -gGGCgCAGGCC-GGCUAGCCUGUg- -3'
miRNA:   3'- uaCUGgGUCCGGuCCGAUUGGACGga -5'
33302 3' -59.6 NC_007605.1 + 154500 0.69 0.551898
Target:  5'- cAUGAUaacgCCGGGagaagagcaCAGGCUAGCCgGCCUg -3'
miRNA:   3'- -UACUG----GGUCCg--------GUCCGAUUGGaCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.