Results 41 - 60 of 155 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 73315 | 0.66 | 0.712958 |
Target: 5'- cUGGCCCcGGCagguGGcCUGGCCgGCCa -3' miRNA: 3'- uACUGGGuCCGgu--CC-GAUUGGaCGGa -5' |
|||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 67690 | 0.67 | 0.693068 |
Target: 5'- cGUGGCCaacgcaggCAcGGCCGGGCUAAUCaGCUUc -3' miRNA: 3'- -UACUGG--------GU-CCGGUCCGAUUGGaCGGA- -5' |
|||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 65508 | 0.66 | 0.751854 |
Target: 5'- uAUGGCCUccauGGGCCucgGGGUgcagGGCCUGgCCg -3' miRNA: 3'- -UACUGGG----UCCGG---UCCGa---UUGGAC-GGa -5' |
|||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 64651 | 0.72 | 0.406672 |
Target: 5'- cGUGACCCAGGCCcucuauaggcaccugGGGCgcuACCUcuuucagcgaGCCg -3' miRNA: 3'- -UACUGGGUCCGG---------------UCCGau-UGGA----------CGGa -5' |
|||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 64129 | 0.68 | 0.582888 |
Target: 5'- -aGACCCcgaggcugauguccuGGCCGGGC--GCCUGCUc -3' miRNA: 3'- uaCUGGGu--------------CCGGUCCGauUGGACGGa -5' |
|||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 63493 | 0.68 | 0.622325 |
Target: 5'- -cGACCCGGGC--GGCUAcACCccgGCCg -3' miRNA: 3'- uaCUGGGUCCGguCCGAU-UGGa--CGGa -5' |
|||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 62170 | 0.69 | 0.532167 |
Target: 5'- cAUGGCCUugauguccgcGGCCguGGGCUGAcCCUGCCc -3' miRNA: 3'- -UACUGGGu---------CCGG--UCCGAUU-GGACGGa -5' |
|||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 61712 | 0.71 | 0.429261 |
Target: 5'- uGUGGCCCGGGCggccuaccugCGGGCggaGGCCgagGCCg -3' miRNA: 3'- -UACUGGGUCCG----------GUCCGa--UUGGa--CGGa -5' |
|||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 61262 | 0.69 | 0.542003 |
Target: 5'- --aGCCgGGGCCGGG---GCCUGCCa -3' miRNA: 3'- uacUGGgUCCGGUCCgauUGGACGGa -5' |
|||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 60475 | 0.68 | 0.612185 |
Target: 5'- -gGGCCCuGGCCAcGGCcGACacgGCCa -3' miRNA: 3'- uaCUGGGuCCGGU-CCGaUUGga-CGGa -5' |
|||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 60287 | 0.67 | 0.672979 |
Target: 5'- -cGGCCguGGCCAgGGCccACCUGgCg -3' miRNA: 3'- uaCUGGguCCGGU-CCGauUGGACgGa -5' |
|||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 59742 | 0.67 | 0.682039 |
Target: 5'- -gGACCCGGGCCGugcgagcaaaggcGGCgagAACCgagggGCUUc -3' miRNA: 3'- uaCUGGGUCCGGU-------------CCGa--UUGGa----CGGA- -5' |
|||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 58707 | 0.69 | 0.561847 |
Target: 5'- -gGACCUcGGCCAGGgaCUGAacaaCUGCCg -3' miRNA: 3'- uaCUGGGuCCGGUCC--GAUUg---GACGGa -5' |
|||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 55770 | 0.66 | 0.751854 |
Target: 5'- -aGGCCaCAccGGCCAGGCccAACaUUGCCUc -3' miRNA: 3'- uaCUGG-GU--CCGGUCCGa-UUG-GACGGA- -5' |
|||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 54415 | 1.05 | 0.00225 |
Target: 5'- aAUGACCCAGGCCAGGCUAACCUGCCUc -3' miRNA: 3'- -UACUGGGUCCGGUCCGAUUGGACGGA- -5' |
|||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 54247 | 0.66 | 0.722806 |
Target: 5'- cUGACCgAGGCCgAGGC-GGCCgagGUCc -3' miRNA: 3'- uACUGGgUCCGG-UCCGaUUGGa--CGGa -5' |
|||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 53838 | 0.69 | 0.532167 |
Target: 5'- --uGCCCGGGCCAGGgcGGCCUcgaggggaGCCUg -3' miRNA: 3'- uacUGGGUCCGGUCCgaUUGGA--------CGGA- -5' |
|||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 48729 | 0.67 | 0.672979 |
Target: 5'- cGUGACCagaAGGagaagCAuGuGCUGACCUGCCa -3' miRNA: 3'- -UACUGGg--UCCg----GU-C-CGAUUGGACGGa -5' |
|||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 48004 | 0.68 | 0.622325 |
Target: 5'- -gGGCCguGGCCAGGgguuACCgagGCCUc -3' miRNA: 3'- uaCUGGguCCGGUCCgau-UGGa--CGGA- -5' |
|||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 47595 | 0.76 | 0.228211 |
Target: 5'- ---cUCCAGGCUccuggaucugGGGCUGGCCUGCCUg -3' miRNA: 3'- uacuGGGUCCGG----------UCCGAUUGGACGGA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home