Results 61 - 80 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 19813 | 0.72 | 0.381555 |
Target: 5'- uGUGACCCuuGGGCCuGGCUccccAuagacucccauguaaGCCUGCCUc -3' miRNA: 3'- -UACUGGG--UCCGGuCCGA----U---------------UGGACGGA- -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 22882 | 0.72 | 0.381555 |
Target: 5'- uGUGACCCuuGGGCCuGGCUccccAuagacucccauguaaGCCUGCCUc -3' miRNA: 3'- -UACUGGG--UCCGGuCCGA----U---------------UGGACGGA- -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 31138 | 0.7 | 0.503072 |
Target: 5'- -aGACCCGGGUCucGGCcAGCCgaGCCg -3' miRNA: 3'- uaCUGGGUCCGGu-CCGaUUGGa-CGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 34207 | 0.7 | 0.503072 |
Target: 5'- -aGACCCGGGUCucGGCcAGCCgaGCCg -3' miRNA: 3'- uaCUGGGUCCGGu-CCGaUUGGa-CGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 12186 | 0.7 | 0.503072 |
Target: 5'- ---cCCCGGGCCAGGCcaccuuaGACCcgGCCa -3' miRNA: 3'- uacuGGGUCCGGUCCGa------UUGGa-CGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 15255 | 0.7 | 0.503072 |
Target: 5'- ---cCCCGGGCCAGGCcaccuuaGACCcgGCCa -3' miRNA: 3'- uacuGGGUCCGGUCCGa------UUGGa-CGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 18324 | 0.7 | 0.503072 |
Target: 5'- ---cCCCGGGCCAGGCcaccuuaGACCcgGCCa -3' miRNA: 3'- uacuGGGUCCGGUCCGa------UUGGa-CGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 21393 | 0.7 | 0.503072 |
Target: 5'- ---cCCCGGGCCAGGCcaccuuaGACCcgGCCa -3' miRNA: 3'- uacuGGGUCCGGUCCGa------UUGGa-CGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 24462 | 0.7 | 0.503072 |
Target: 5'- ---cCCCGGGCCAGGCcaccuuaGACCcgGCCa -3' miRNA: 3'- uacuGGGUCCGGUCCGa------UUGGa-CGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 27531 | 0.7 | 0.503072 |
Target: 5'- ---cCCCGGGCCAGGCcaccuuaGACCcgGCCa -3' miRNA: 3'- uacuGGGUCCGGUCCGa------UUGGa-CGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 28069 | 0.7 | 0.503072 |
Target: 5'- -aGACCCGGGUCucGGCcAGCCgaGCCg -3' miRNA: 3'- uaCUGGGUCCGGu-CCGaUUGGa-CGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 25000 | 0.7 | 0.503072 |
Target: 5'- -aGACCCGGGUCucGGCcAGCCgaGCCg -3' miRNA: 3'- uaCUGGGUCCGGu-CCGaUUGGa-CGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 25950 | 0.72 | 0.381555 |
Target: 5'- uGUGACCCuuGGGCCuGGCUccccAuagacucccauguaaGCCUGCCUc -3' miRNA: 3'- -UACUGGG--UCCGGuCCGA----U---------------UGGACGGA- -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 29019 | 0.72 | 0.381555 |
Target: 5'- uGUGACCCuuGGGCCuGGCUccccAuagacucccauguaaGCCUGCCUc -3' miRNA: 3'- -UACUGGG--UCCGGuCCGA----U---------------UGGACGGA- -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 32088 | 0.72 | 0.381555 |
Target: 5'- uGUGACCCuuGGGCCuGGCUccccAuagacucccauguaaGCCUGCCUc -3' miRNA: 3'- -UACUGGG--UCCGGuCCGA----U---------------UGGACGGA- -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 35157 | 0.72 | 0.381555 |
Target: 5'- uGUGACCCuuGGGCCuGGCUccccAuagacucccauguaaGCCUGCCUc -3' miRNA: 3'- -UACUGGG--UCCGGuCCGA----U---------------UGGACGGA- -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 64651 | 0.72 | 0.406672 |
Target: 5'- cGUGACCCAGGCCcucuauaggcaccugGGGCgcuACCUcuuucagcgaGCCg -3' miRNA: 3'- -UACUGGGUCCGG---------------UCCGau-UGGA----------CGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 12725 | 0.7 | 0.503072 |
Target: 5'- -aGACCCGGGUCucGGCcAGCCgaGCCg -3' miRNA: 3'- uaCUGGGUCCGGu-CCGaUUGGa-CGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 15794 | 0.7 | 0.503072 |
Target: 5'- -aGACCCGGGUCucGGCcAGCCgaGCCg -3' miRNA: 3'- uaCUGGGUCCGGu-CCGaUUGGa-CGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 18863 | 0.7 | 0.503072 |
Target: 5'- -aGACCCGGGUCucGGCcAGCCgaGCCg -3' miRNA: 3'- uaCUGGGUCCGGu-CCGaUUGGa-CGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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