Results 121 - 140 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 14758 | 0.78 | 0.161428 |
Target: 5'- -gGGCCCGGGCCGGGUUGGuCCaggGCCUu -3' miRNA: 3'- uaCUGGGUCCGGUCCGAUU-GGa--CGGA- -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 17827 | 0.78 | 0.161428 |
Target: 5'- -gGGCCCGGGCCGGGUUGGuCCaggGCCUu -3' miRNA: 3'- uaCUGGGUCCGGUCCGAUU-GGa--CGGA- -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 20896 | 0.78 | 0.161428 |
Target: 5'- -gGGCCCGGGCCGGGUUGGuCCaggGCCUu -3' miRNA: 3'- uaCUGGGUCCGGUCCGAUU-GGa--CGGA- -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 23965 | 0.78 | 0.161428 |
Target: 5'- -gGGCCCGGGCCGGGUUGGuCCaggGCCUu -3' miRNA: 3'- uaCUGGGUCCGGUCCGAUU-GGa--CGGA- -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 27034 | 0.78 | 0.161428 |
Target: 5'- -gGGCCCGGGCCGGGUUGGuCCaggGCCUu -3' miRNA: 3'- uaCUGGGUCCGGUCCGAUU-GGa--CGGA- -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 30103 | 0.78 | 0.161428 |
Target: 5'- -gGGCCCGGGCCGGGUUGGuCCaggGCCUu -3' miRNA: 3'- uaCUGGGUCCGGUCCGAUU-GGa--CGGA- -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 33171 | 0.78 | 0.161428 |
Target: 5'- -gGGCCCGGGCCGGGUUGGuCCaggGCCUu -3' miRNA: 3'- uaCUGGGUCCGGUCCGAUU-GGa--CGGA- -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 27976 | 0.71 | 0.429261 |
Target: 5'- -aGACCCGGGCUcGGCcAGCCcaGCCg -3' miRNA: 3'- uaCUGGGUCCGGuCCGaUUGGa-CGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 24907 | 0.71 | 0.429261 |
Target: 5'- -aGACCCGGGCUcGGCcAGCCcaGCCg -3' miRNA: 3'- uaCUGGGUCCGGuCCGaUUGGa-CGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 15976 | 0.7 | 0.474689 |
Target: 5'- -aGACCCGGGUCuGGggGGCCUGUg- -3' miRNA: 3'- uaCUGGGUCCGGuCCgaUUGGACGga -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 19045 | 0.7 | 0.474689 |
Target: 5'- -aGACCCGGGUCuGGggGGCCUGUg- -3' miRNA: 3'- uaCUGGGUCCGGuCCgaUUGGACGga -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 22114 | 0.7 | 0.474689 |
Target: 5'- -aGACCCGGGUCuGGggGGCCUGUg- -3' miRNA: 3'- uaCUGGGUCCGGuCCgaUUGGACGga -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 25182 | 0.7 | 0.474689 |
Target: 5'- -aGACCCGGGUCuGGggGGCCUGUg- -3' miRNA: 3'- uaCUGGGUCCGGuCCgaUUGGACGga -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 28251 | 0.7 | 0.474689 |
Target: 5'- -aGACCCGGGUCuGGggGGCCUGUg- -3' miRNA: 3'- uaCUGGGUCCGGuCCgaUUGGACGga -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 31320 | 0.7 | 0.474689 |
Target: 5'- -aGACCCGGGUCuGGggGGCCUGUg- -3' miRNA: 3'- uaCUGGGUCCGGuCCgaUUGGACGga -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 34389 | 0.7 | 0.474689 |
Target: 5'- -aGACCCGGGUCuGGggGGCCUGUg- -3' miRNA: 3'- uaCUGGGUCCGGuCCgaUUGGACGga -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 12631 | 0.71 | 0.429261 |
Target: 5'- -aGACCCGGGCUcGGCcAGCCcaGCCg -3' miRNA: 3'- uaCUGGGUCCGGuCCGaUUGGa-CGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 15700 | 0.71 | 0.429261 |
Target: 5'- -aGACCCGGGCUcGGCcAGCCcaGCCg -3' miRNA: 3'- uaCUGGGUCCGGuCCGaUUGGa-CGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 18769 | 0.71 | 0.429261 |
Target: 5'- -aGACCCGGGCUcGGCcAGCCcaGCCg -3' miRNA: 3'- uaCUGGGUCCGGuCCGaUUGGa-CGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 21838 | 0.71 | 0.429261 |
Target: 5'- -aGACCCGGGCUcGGCcAGCCcaGCCg -3' miRNA: 3'- uaCUGGGUCCGGuCCGaUUGGa-CGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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