miRNA display CGI


Results 61 - 80 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33302 3' -59.6 NC_007605.1 + 73515 0.73 0.354367
Target:  5'- uUGGCC--GGCCAGGCc-ACCUGCCg -3'
miRNA:   3'- uACUGGguCCGGUCCGauUGGACGGa -5'
33302 3' -59.6 NC_007605.1 + 27976 0.71 0.429261
Target:  5'- -aGACCCGGGCUcGGCcAGCCcaGCCg -3'
miRNA:   3'- uaCUGGGUCCGGuCCGaUUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 18769 0.71 0.429261
Target:  5'- -aGACCCGGGCUcGGCcAGCCcaGCCg -3'
miRNA:   3'- uaCUGGGUCCGGuCCGaUUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 28251 0.7 0.474689
Target:  5'- -aGACCCGGGUCuGGggGGCCUGUg- -3'
miRNA:   3'- uaCUGGGUCCGGuCCgaUUGGACGga -5'
33302 3' -59.6 NC_007605.1 + 27566 0.67 0.672979
Target:  5'- -aGGCCgGGGuCCAGGggGACCcgaggGCCUu -3'
miRNA:   3'- uaCUGGgUCC-GGUCCgaUUGGa----CGGA- -5'
33302 3' -59.6 NC_007605.1 + 63493 0.68 0.622325
Target:  5'- -cGACCCGGGC--GGCUAcACCccgGCCg -3'
miRNA:   3'- uaCUGGGUCCGguCCGAU-UGGa--CGGa -5'
33302 3' -59.6 NC_007605.1 + 82753 0.68 0.60206
Target:  5'- -aGGCCacucggGGGCCugaGGGCagGGCCUGCCa -3'
miRNA:   3'- uaCUGGg-----UCCGG---UCCGa-UUGGACGGa -5'
33302 3' -59.6 NC_007605.1 + 170951 0.73 0.331536
Target:  5'- cGUGACCCGGGgcuCCGGGgUGACCcaGCCa -3'
miRNA:   3'- -UACUGGGUCC---GGUCCgAUUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 4386 0.68 0.581883
Target:  5'- -cGACggGGGCCuGG-UGACCUGCCUg -3'
miRNA:   3'- uaCUGggUCCGGuCCgAUUGGACGGA- -5'
33302 3' -59.6 NC_007605.1 + 64129 0.68 0.582888
Target:  5'- -aGACCCcgaggcugauguccuGGCCGGGC--GCCUGCUc -3'
miRNA:   3'- uaCUGGGu--------------CCGGUCCGauUGGACGGa -5'
33302 3' -59.6 NC_007605.1 + 4054 0.68 0.60206
Target:  5'- cGUGGCCUGGGCguGaaGCUGACCUuuggcucgGCCUc -3'
miRNA:   3'- -UACUGGGUCCGguC--CGAUUGGA--------CGGA- -5'
33302 3' -59.6 NC_007605.1 + 40345 0.67 0.642619
Target:  5'- -gGACCCuGGuGCCAGGCaggGACCccgcGCCa -3'
miRNA:   3'- uaCUGGG-UC-CGGUCCGa--UUGGa---CGGa -5'
33302 3' -59.6 NC_007605.1 + 28069 0.7 0.503072
Target:  5'- -aGACCCGGGUCucGGCcAGCCgaGCCg -3'
miRNA:   3'- uaCUGGGUCCGGu-CCGaUUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 25000 0.7 0.503072
Target:  5'- -aGACCCGGGUCucGGCcAGCCgaGCCg -3'
miRNA:   3'- uaCUGGGUCCGGu-CCGaUUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 18863 0.7 0.503072
Target:  5'- -aGACCCGGGUCucGGCcAGCCgaGCCg -3'
miRNA:   3'- uaCUGGGUCCGGu-CCGaUUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 15794 0.7 0.503072
Target:  5'- -aGACCCGGGUCucGGCcAGCCgaGCCg -3'
miRNA:   3'- uaCUGGGUCCGGu-CCGaUUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 12427 0.67 0.642619
Target:  5'- -gGGCCgGucGGCUGGGCUGGCCgaGCCc -3'
miRNA:   3'- uaCUGGgU--CCGGUCCGAUUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 15496 0.67 0.642619
Target:  5'- -gGGCCgGucGGCUGGGCUGGCCgaGCCc -3'
miRNA:   3'- uaCUGGgU--CCGGUCCGAUUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 48004 0.68 0.622325
Target:  5'- -gGGCCguGGCCAGGgguuACCgagGCCUc -3'
miRNA:   3'- uaCUGGguCCGGUCCgau-UGGa--CGGA- -5'
33302 3' -59.6 NC_007605.1 + 170429 0.73 0.331536
Target:  5'- cGUGACCCGGGgcuCCGGGgUGACCcaGCCa -3'
miRNA:   3'- -UACUGGGUCC---GGUCCgAUUGGa-CGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.