Results 81 - 100 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33302 | 3' | -59.6 | NC_007605.1 | + | 154285 | 0.74 | 0.309806 |
Target: 5'- -gGGCgCAGGCC-GGCUAGCCUGUg- -3' miRNA: 3'- uaCUGgGUCCGGuCCGAUUGGACGga -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 24214 | 0.74 | 0.282545 |
Target: 5'- -aGACCCGGGCuuCAGGC---CCUGCCUc -3' miRNA: 3'- uaCUGGGUCCG--GUCCGauuGGACGGA- -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 21145 | 0.74 | 0.282545 |
Target: 5'- -aGACCCGGGCuuCAGGC---CCUGCCUc -3' miRNA: 3'- uaCUGGGUCCG--GUCCGauuGGACGGA- -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 23092 | 0.69 | 0.526297 |
Target: 5'- -aGGCUCAGGCCAuGCgcgcccugucaccaGGCCUGCCa -3' miRNA: 3'- uaCUGGGUCCGGUcCGa-------------UUGGACGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 26161 | 0.69 | 0.526297 |
Target: 5'- -aGGCUCAGGCCAuGCgcgcccugucaccaGGCCUGCCa -3' miRNA: 3'- uaCUGGGUCCGGUcCGa-------------UUGGACGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 29230 | 0.69 | 0.526297 |
Target: 5'- -aGGCUCAGGCCAuGCgcgcccugucaccaGGCCUGCCa -3' miRNA: 3'- uaCUGGGUCCGGUcCGa-------------UUGGACGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 12427 | 0.67 | 0.642619 |
Target: 5'- -gGGCCgGucGGCUGGGCUGGCCgaGCCc -3' miRNA: 3'- uaCUGGgU--CCGGUCCGAUUGGa-CGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 143160 | 0.67 | 0.642619 |
Target: 5'- -gGACCCuGGuGCCAGGCaggGACCccgcGCCa -3' miRNA: 3'- uaCUGGG-UC-CGGUCCGa--UUGGa---CGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 40345 | 0.67 | 0.642619 |
Target: 5'- -gGACCCuGGuGCCAGGCaggGACCccgcGCCa -3' miRNA: 3'- uaCUGGG-UC-CGGUCCGa--UUGGa---CGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 48004 | 0.68 | 0.622325 |
Target: 5'- -gGGCCguGGCCAGGgguuACCgagGCCUc -3' miRNA: 3'- uaCUGGguCCGGUCCgau-UGGa--CGGA- -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 4054 | 0.68 | 0.60206 |
Target: 5'- cGUGGCCUGGGCguGaaGCUGACCUuuggcucgGCCUc -3' miRNA: 3'- -UACUGGGUCCGguC--CGAUUGGA--------CGGA- -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 64129 | 0.68 | 0.582888 |
Target: 5'- -aGACCCcgaggcugauguccuGGCCGGGC--GCCUGCUc -3' miRNA: 3'- uaCUGGGu--------------CCGGUCCGauUGGACGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 4386 | 0.68 | 0.581883 |
Target: 5'- -cGACggGGGCCuGG-UGACCUGCCUg -3' miRNA: 3'- uaCUGggUCCGGuCCgAUUGGACGGA- -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 58707 | 0.69 | 0.561847 |
Target: 5'- -gGACCUcGGCCAGGgaCUGAacaaCUGCCg -3' miRNA: 3'- uaCUGGGuCCGGUCC--GAUUg---GACGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 61262 | 0.69 | 0.542003 |
Target: 5'- --aGCCgGGGCCGGG---GCCUGCCa -3' miRNA: 3'- uacUGGgUCCGGUCCgauUGGACGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 164922 | 0.69 | 0.542003 |
Target: 5'- uGUGGCCgCcGGCCAGGCUGucACC-GCUUu -3' miRNA: 3'- -UACUGG-GuCCGGUCCGAU--UGGaCGGA- -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 62170 | 0.69 | 0.532167 |
Target: 5'- cAUGGCCUugauguccgcGGCCguGGGCUGAcCCUGCCc -3' miRNA: 3'- -UACUGGGu---------CCGG--UCCGAUU-GGACGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 53838 | 0.69 | 0.532167 |
Target: 5'- --uGCCCGGGCCAGGgcGGCCUcgaggggaGCCUg -3' miRNA: 3'- uacUGGGUCCGGUCCgaUUGGA--------CGGA- -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 36641 | 0.69 | 0.529229 |
Target: 5'- -aGGCCCacaaacagccccucAGGCCAGGUUGGuCCaGCCa -3' miRNA: 3'- uaCUGGG--------------UCCGGUCCGAUU-GGaCGGa -5' |
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33302 | 3' | -59.6 | NC_007605.1 | + | 32299 | 0.69 | 0.526297 |
Target: 5'- -aGGCUCAGGCCAuGCgcgcccugucaccaGGCCUGCCa -3' miRNA: 3'- uaCUGGGUCCGGUcCGa-------------UUGGACGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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