miRNA display CGI


Results 101 - 120 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33302 3' -59.6 NC_007605.1 + 164922 0.69 0.542003
Target:  5'- uGUGGCCgCcGGCCAGGCUGucACC-GCUUu -3'
miRNA:   3'- -UACUGG-GuCCGGUCCGAU--UGGaCGGA- -5'
33302 3' -59.6 NC_007605.1 + 62170 0.69 0.532167
Target:  5'- cAUGGCCUugauguccgcGGCCguGGGCUGAcCCUGCCc -3'
miRNA:   3'- -UACUGGGu---------CCGG--UCCGAUU-GGACGGa -5'
33302 3' -59.6 NC_007605.1 + 53838 0.69 0.532167
Target:  5'- --uGCCCGGGCCAGGgcGGCCUcgaggggaGCCUg -3'
miRNA:   3'- uacUGGGUCCGGUCCgaUUGGA--------CGGA- -5'
33302 3' -59.6 NC_007605.1 + 36641 0.69 0.529229
Target:  5'- -aGGCCCacaaacagccccucAGGCCAGGUUGGuCCaGCCa -3'
miRNA:   3'- uaCUGGG--------------UCCGGUCCGAUU-GGaCGGa -5'
33302 3' -59.6 NC_007605.1 + 26161 0.69 0.526297
Target:  5'- -aGGCUCAGGCCAuGCgcgcccugucaccaGGCCUGCCa -3'
miRNA:   3'- uaCUGGGUCCGGUcCGa-------------UUGGACGGa -5'
33302 3' -59.6 NC_007605.1 + 20023 0.69 0.526297
Target:  5'- -aGGCUCAGGCCAuGCgcgcccugucaccaGGCCUGCCa -3'
miRNA:   3'- uaCUGGGUCCGGUcCGa-------------UUGGACGGa -5'
33302 3' -59.6 NC_007605.1 + 13886 0.69 0.526297
Target:  5'- -aGGCUCAGGCCAuGCgcgcccugucaccaGGCCUGCCa -3'
miRNA:   3'- uaCUGGGUCCGGUcCGa-------------UUGGACGGa -5'
33302 3' -59.6 NC_007605.1 + 55770 0.66 0.751854
Target:  5'- -aGGCCaCAccGGCCAGGCccAACaUUGCCUc -3'
miRNA:   3'- uaCUGG-GU--CCGGUCCGa-UUG-GACGGA- -5'
33302 3' -59.6 NC_007605.1 + 21932 0.66 0.751854
Target:  5'- -aGACCCGGGUCucGGCcAGCCgagcgaccgGCCc -3'
miRNA:   3'- uaCUGGGUCCGGu-CCGaUUGGa--------CGGa -5'
33302 3' -59.6 NC_007605.1 + 160297 0.66 0.750899
Target:  5'- -aGAUCCAGGgcccguuCCAGGCUcuCCaGCCc -3'
miRNA:   3'- uaCUGGGUCC-------GGUCCGAuuGGaCGGa -5'
33302 3' -59.6 NC_007605.1 + 159483 0.66 0.742263
Target:  5'- -gGGCgCCggacGGGCCGGGCUcucgugccccAGCCgGCCg -3'
miRNA:   3'- uaCUG-GG----UCCGGUCCGA----------UUGGaCGGa -5'
33302 3' -59.6 NC_007605.1 + 134811 0.66 0.742263
Target:  5'- -cGugCCAGGCCgccaugcucaGGGCcacGGCgUGCCa -3'
miRNA:   3'- uaCugGGUCCGG----------UCCGa--UUGgACGGa -5'
33302 3' -59.6 NC_007605.1 + 4632 0.66 0.742263
Target:  5'- -cGGCCCAGagacgguguugcGCCAGucGCUGcGCCUGCUg -3'
miRNA:   3'- uaCUGGGUC------------CGGUC--CGAU-UGGACGGa -5'
33302 3' -59.6 NC_007605.1 + 160851 0.66 0.722806
Target:  5'- -cGGCCgAGGCCugcgacgcGGuGCUGACCggcucgGCCa -3'
miRNA:   3'- uaCUGGgUCCGG--------UC-CGAUUGGa-----CGGa -5'
33302 3' -59.6 NC_007605.1 + 135070 0.66 0.722806
Target:  5'- cUGGCUCAGGUCcGGCgc-CCUGCg- -3'
miRNA:   3'- uACUGGGUCCGGuCCGauuGGACGga -5'
33302 3' -59.6 NC_007605.1 + 23092 0.69 0.526297
Target:  5'- -aGGCUCAGGCCAuGCgcgcccugucaccaGGCCUGCCa -3'
miRNA:   3'- uaCUGGGUCCGGUcCGa-------------UUGGACGGa -5'
33302 3' -59.6 NC_007605.1 + 30600 0.7 0.503072
Target:  5'- ---cCCCGGGCCAGGCcaccuuaGACCcgGCCa -3'
miRNA:   3'- uacuGGGUCCGGUCCGa------UUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 33669 0.7 0.503072
Target:  5'- ---cCCCGGGCCAGGCcaccuuaGACCcgGCCa -3'
miRNA:   3'- uacuGGGUCCGGUCCGa------UUGGa-CGGa -5'
33302 3' -59.6 NC_007605.1 + 3666 0.7 0.512697
Target:  5'- --aGCCCGGGgUAGGUccccugGACCUGCCg -3'
miRNA:   3'- uacUGGGUCCgGUCCGa-----UUGGACGGa -5'
33302 3' -59.6 NC_007605.1 + 33910 0.69 0.522397
Target:  5'- -gGGCCgGucGGCUGGGCUGGCCgGCCc -3'
miRNA:   3'- uaCUGGgU--CCGGUCCGAUUGGaCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.