miRNA display CGI


Results 1 - 20 of 302 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33302 5' -63.2 NC_007605.1 + 151726 0.66 0.657299
Target:  5'- cCCAGGCucCCgGCCUCaCCCAGGaaGa -3'
miRNA:   3'- -GGUCCGuuGG-CGGGGcGGGUCCgaCc -5'
33302 5' -63.2 NC_007605.1 + 140903 0.66 0.657299
Target:  5'- uCCAGG--GCCGgaaCCCCGaCCC-GGCUGc -3'
miRNA:   3'- -GGUCCguUGGC---GGGGC-GGGuCCGACc -5'
33302 5' -63.2 NC_007605.1 + 88395 0.66 0.657299
Target:  5'- aCCAGG-AGCCG-CCgGCCCacGGGCUc- -3'
miRNA:   3'- -GGUCCgUUGGCgGGgCGGG--UCCGAcc -5'
33302 5' -63.2 NC_007605.1 + 50231 0.66 0.657299
Target:  5'- aUAGGCGcACCucggGCCgCGCgCCAGGCUc- -3'
miRNA:   3'- gGUCCGU-UGG----CGGgGCG-GGUCCGAcc -5'
33302 5' -63.2 NC_007605.1 + 139239 0.66 0.657299
Target:  5'- aCAGGUccauagcACCGCuauccacuauguCUCGCCCGGGCUa- -3'
miRNA:   3'- gGUCCGu------UGGCG------------GGGCGGGUCCGAcc -5'
33302 5' -63.2 NC_007605.1 + 31027 0.66 0.647691
Target:  5'- cCCAGcCGACCgGCCCCaCuCCGGGCg-- -3'
miRNA:   3'- -GGUCcGUUGG-CGGGGcG-GGUCCGacc -5'
33302 5' -63.2 NC_007605.1 + 112547 0.66 0.647691
Target:  5'- cCCAGGaCAACagGCCCUggcacgagGCCCGGaGCUccGGc -3'
miRNA:   3'- -GGUCC-GUUGg-CGGGG--------CGGGUC-CGA--CC- -5'
33302 5' -63.2 NC_007605.1 + 169923 0.66 0.647691
Target:  5'- gCAGGCucCCGCgCCGCCCcccGCUc- -3'
miRNA:   3'- gGUCCGuuGGCGgGGCGGGuc-CGAcc -5'
33302 5' -63.2 NC_007605.1 + 34096 0.66 0.647691
Target:  5'- cCCAGcCGACCgGCCCCaCuCCGGGCg-- -3'
miRNA:   3'- -GGUCcGUUGG-CGGGGcG-GGUCCGacc -5'
33302 5' -63.2 NC_007605.1 + 15682 0.66 0.647691
Target:  5'- cCCAGcCGACCgGCCCCaCuCCGGGCg-- -3'
miRNA:   3'- -GGUCcGUUGG-CGGGGcG-GGUCCGacc -5'
33302 5' -63.2 NC_007605.1 + 92041 0.66 0.647691
Target:  5'- gCAGGCAcgcgggaagcacGCCGCUcacguagcuccuCUGUCCGgcguGGCUGGa -3'
miRNA:   3'- gGUCCGU------------UGGCGG------------GGCGGGU----CCGACC- -5'
33302 5' -63.2 NC_007605.1 + 171521 0.66 0.647691
Target:  5'- gCAGGCucCCGCgCCGCCCcccGCUc- -3'
miRNA:   3'- gGUCCGuuGGCGgGGCGGGuc-CGAcc -5'
33302 5' -63.2 NC_007605.1 + 27958 0.66 0.647691
Target:  5'- cCCAGcCGACCgGCCCCaCuCCGGGCg-- -3'
miRNA:   3'- -GGUCcGUUGG-CGGGGcG-GGUCCGacc -5'
33302 5' -63.2 NC_007605.1 + 12613 0.66 0.647691
Target:  5'- cCCAGcCGACCgGCCCCaCuCCGGGCg-- -3'
miRNA:   3'- -GGUCcGUUGG-CGGGGcG-GGUCCGacc -5'
33302 5' -63.2 NC_007605.1 + 170461 0.66 0.647691
Target:  5'- gCAGGCucCCGCgCCGCCCcccGCUc- -3'
miRNA:   3'- gGUCCGuuGGCGgGGCGGGuc-CGAcc -5'
33302 5' -63.2 NC_007605.1 + 18751 0.66 0.647691
Target:  5'- cCCAGcCGACCgGCCCCaCuCCGGGCg-- -3'
miRNA:   3'- -GGUCcGUUGG-CGGGGcG-GGUCCGacc -5'
33302 5' -63.2 NC_007605.1 + 170983 0.66 0.647691
Target:  5'- gCAGGCucCCGCgCCGCCCcccGCUc- -3'
miRNA:   3'- gGUCCGuuGGCGgGGCGGGuc-CGAcc -5'
33302 5' -63.2 NC_007605.1 + 160000 0.66 0.647691
Target:  5'- cCCGGGagcgUCGCCUgGCCCuGGUgcgGGg -3'
miRNA:   3'- -GGUCCguu-GGCGGGgCGGGuCCGa--CC- -5'
33302 5' -63.2 NC_007605.1 + 24889 0.66 0.647691
Target:  5'- cCCAGcCGACCgGCCCCaCuCCGGGCg-- -3'
miRNA:   3'- -GGUCcGUUGG-CGGGGcG-GGUCCGacc -5'
33302 5' -63.2 NC_007605.1 + 21820 0.66 0.647691
Target:  5'- cCCAGcCGACCgGCCCCaCuCCGGGCg-- -3'
miRNA:   3'- -GGUCcGUUGG-CGGGGcG-GGUCCGacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.