miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33303 3' -65.7 NC_007605.1 + 55026 1.09 0.000499
Target:  5'- aGGCGCUGGGGGCACGCCCAGAGCCCGc -3'
miRNA:   3'- -CCGCGACCCCCGUGCGGGUCUCGGGC- -5'
33303 3' -65.7 NC_007605.1 + 164548 0.78 0.089189
Target:  5'- cGUGCUGGGGGCAauCGCCCAcuaccuGGCCCu -3'
miRNA:   3'- cCGCGACCCCCGU--GCGGGUc-----UCGGGc -5'
33303 3' -65.7 NC_007605.1 + 128150 0.73 0.19442
Target:  5'- uGCGCggcGGGGGCAuUGCCCAGcuugggcaccugucGCCCGa -3'
miRNA:   3'- cCGCGa--CCCCCGU-GCGGGUCu-------------CGGGC- -5'
33303 3' -65.7 NC_007605.1 + 50578 0.73 0.188195
Target:  5'- gGGCGCUGGcGGCcgGCGCCCguccucgggGGcAGCCCa -3'
miRNA:   3'- -CCGCGACCcCCG--UGCGGG---------UC-UCGGGc -5'
33303 3' -65.7 NC_007605.1 + 39655 0.72 0.221148
Target:  5'- uGGCGCUccGGGGGCAgccgggcggcCGCCgGuGGGUCCGc -3'
miRNA:   3'- -CCGCGA--CCCCCGU----------GCGGgU-CUCGGGC- -5'
33303 3' -65.7 NC_007605.1 + 31235 0.72 0.226238
Target:  5'- gGGgGCUGaGGGCGacCGUCCGG-GCCCGg -3'
miRNA:   3'- -CCgCGACcCCCGU--GCGGGUCuCGGGC- -5'
33303 3' -65.7 NC_007605.1 + 28166 0.72 0.226238
Target:  5'- gGGgGCUGaGGGCGacCGUCCGG-GCCCGg -3'
miRNA:   3'- -CCgCGACcCCCGU--GCGGGUCuCGGGC- -5'
33303 3' -65.7 NC_007605.1 + 38906 0.72 0.216156
Target:  5'- uGGCGCUccGGGGGCAgcgggcggcCGCCgGuGGGUCCGc -3'
miRNA:   3'- -CCGCGA--CCCCCGU---------GCGGgU-CUCGGGC- -5'
33303 3' -65.7 NC_007605.1 + 3248 0.72 0.221148
Target:  5'- uGGgGCccgGGGGGCGCGCgU--AGCCCGa -3'
miRNA:   3'- -CCgCGa--CCCCCGUGCGgGucUCGGGC- -5'
33303 3' -65.7 NC_007605.1 + 39530 0.72 0.221148
Target:  5'- uGGCGCUccGGGGGCAgccgggcggcCGCCgGuGGGUCCGc -3'
miRNA:   3'- -CCGCGA--CCCCCGU----------GCGGgU-CUCGGGC- -5'
33303 3' -65.7 NC_007605.1 + 39405 0.72 0.221148
Target:  5'- uGGCGCUccGGGGGCAgccgggcggcCGCCgGuGGGUCCGc -3'
miRNA:   3'- -CCGCGA--CCCCCGU----------GCGGgU-CUCGGGC- -5'
33303 3' -65.7 NC_007605.1 + 38281 0.72 0.221148
Target:  5'- uGGCGCUccGGGGGCAgccgggcggcCGCCgGuGGGUCCGc -3'
miRNA:   3'- -CCGCGA--CCCCCGU----------GCGGgU-CUCGGGC- -5'
33303 3' -65.7 NC_007605.1 + 38406 0.72 0.221148
Target:  5'- uGGCGCUccGGGGGCAgccgggcggcCGCCgGuGGGUCCGc -3'
miRNA:   3'- -CCGCGA--CCCCCGU----------GCGGgU-CUCGGGC- -5'
33303 3' -65.7 NC_007605.1 + 38531 0.72 0.221148
Target:  5'- uGGCGCUccGGGGGCAgccgggcggcCGCCgGuGGGUCCGc -3'
miRNA:   3'- -CCGCGA--CCCCCGU----------GCGGgU-CUCGGGC- -5'
33303 3' -65.7 NC_007605.1 + 38656 0.72 0.221148
Target:  5'- uGGCGCUccGGGGGCAgccgggcggcCGCCgGuGGGUCCGc -3'
miRNA:   3'- -CCGCGA--CCCCCGU----------GCGGgU-CUCGGGC- -5'
33303 3' -65.7 NC_007605.1 + 38781 0.72 0.221148
Target:  5'- uGGCGCUccGGGGGCAgccgggcggcCGCCgGuGGGUCCGc -3'
miRNA:   3'- -CCGCGA--CCCCCGU----------GCGGgU-CUCGGGC- -5'
33303 3' -65.7 NC_007605.1 + 39030 0.72 0.221148
Target:  5'- uGGCGCUccGGGGGCAgccgggcggcCGCCgGuGGGUCCGc -3'
miRNA:   3'- -CCGCGA--CCCCCGU----------GCGGgU-CUCGGGC- -5'
33303 3' -65.7 NC_007605.1 + 39155 0.72 0.221148
Target:  5'- uGGCGCUccGGGGGCAgccgggcggcCGCCgGuGGGUCCGc -3'
miRNA:   3'- -CCGCGA--CCCCCGU----------GCGGgU-CUCGGGC- -5'
33303 3' -65.7 NC_007605.1 + 39280 0.72 0.221148
Target:  5'- uGGCGCUccGGGGGCAgccgggcggcCGCCgGuGGGUCCGc -3'
miRNA:   3'- -CCGCGA--CCCCCGU----------GCGGgU-CUCGGGC- -5'
33303 3' -65.7 NC_007605.1 + 34304 0.72 0.226238
Target:  5'- gGGgGCUGaGGGCGacCGUCCGG-GCCCGg -3'
miRNA:   3'- -CCgCGACcCCCGU--GCGGGUCuCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.