miRNA display CGI


Results 21 - 40 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33303 3' -65.7 NC_007605.1 + 141850 0.66 0.523676
Target:  5'- uGGaGCUcgGGGGGCG-GCCgGGuGGCCCa -3'
miRNA:   3'- -CCgCGA--CCCCCGUgCGGgUC-UCGGGc -5'
33303 3' -65.7 NC_007605.1 + 141748 0.66 0.523676
Target:  5'- uGGaGCUcgGGGGGCG-GCCgGGuGGCCCa -3'
miRNA:   3'- -CCgCGA--CCCCCGUgCGGgUC-UCGGGc -5'
33303 3' -65.7 NC_007605.1 + 151016 0.66 0.523676
Target:  5'- gGGgGCUGGcGaGGCgGCGUCCGcGGGCCg- -3'
miRNA:   3'- -CCgCGACC-C-CCG-UGCGGGU-CUCGGgc -5'
33303 3' -65.7 NC_007605.1 + 134529 0.66 0.523676
Target:  5'- aGGC-CUGGGGGUcugcCGCCaccguGGGCCUc -3'
miRNA:   3'- -CCGcGACCCCCGu---GCGGgu---CUCGGGc -5'
33303 3' -65.7 NC_007605.1 + 140729 0.66 0.523676
Target:  5'- uGGaGCUcgGGGGGCG-GCCgGGuGGCCCa -3'
miRNA:   3'- -CCgCGA--CCCCCGUgCGGgUC-UCGGGc -5'
33303 3' -65.7 NC_007605.1 + 140933 0.66 0.523676
Target:  5'- uGGaGCUcgGGGGGCG-GCCgGGuGGCCCa -3'
miRNA:   3'- -CCgCGA--CCCCCGUgCGGgUC-UCGGGc -5'
33303 3' -65.7 NC_007605.1 + 141035 0.66 0.523676
Target:  5'- uGGaGCUcgGGGGGCG-GCCgGGuGGCCCa -3'
miRNA:   3'- -CCgCGA--CCCCCGUgCGGgUC-UCGGGc -5'
33303 3' -65.7 NC_007605.1 + 141137 0.66 0.523676
Target:  5'- uGGaGCUcgGGGGGCG-GCCgGGuGGCCCa -3'
miRNA:   3'- -CCgCGA--CCCCCGUgCGGgUC-UCGGGc -5'
33303 3' -65.7 NC_007605.1 + 141239 0.66 0.523676
Target:  5'- uGGaGCUcgGGGGGCG-GCCgGGuGGCCCa -3'
miRNA:   3'- -CCgCGA--CCCCCGUgCGGgUC-UCGGGc -5'
33303 3' -65.7 NC_007605.1 + 141341 0.66 0.523676
Target:  5'- uGGaGCUcgGGGGGCG-GCCgGGuGGCCCa -3'
miRNA:   3'- -CCgCGA--CCCCCGUgCGGgUC-UCGGGc -5'
33303 3' -65.7 NC_007605.1 + 141443 0.66 0.523676
Target:  5'- uGGaGCUcgGGGGGCG-GCCgGGuGGCCCa -3'
miRNA:   3'- -CCgCGA--CCCCCGUgCGGgUC-UCGGGc -5'
33303 3' -65.7 NC_007605.1 + 141545 0.66 0.523676
Target:  5'- uGGaGCUcgGGGGGCG-GCCgGGuGGCCCa -3'
miRNA:   3'- -CCgCGA--CCCCCGUgCGGgUC-UCGGGc -5'
33303 3' -65.7 NC_007605.1 + 141647 0.66 0.523676
Target:  5'- uGGaGCUcgGGGGGCG-GCCgGGuGGCCCa -3'
miRNA:   3'- -CCgCGA--CCCCCGUgCGGgUC-UCGGGc -5'
33303 3' -65.7 NC_007605.1 + 140831 0.66 0.523676
Target:  5'- uGGaGCUcgGGGGGCG-GCCgGGuGGCCCa -3'
miRNA:   3'- -CCgCGA--CCCCCGUgCGGgUC-UCGGGc -5'
33303 3' -65.7 NC_007605.1 + 2890 0.66 0.514559
Target:  5'- uGGCGCcGGGccgccgcccuGGCAucUGCuCCGGGGCCgGu -3'
miRNA:   3'- -CCGCGaCCC----------CCGU--GCG-GGUCUCGGgC- -5'
33303 3' -65.7 NC_007605.1 + 88516 0.66 0.514559
Target:  5'- uGUGCau-GGGCACaCCCAGGGUCCa -3'
miRNA:   3'- cCGCGaccCCCGUGcGGGUCUCGGGc -5'
33303 3' -65.7 NC_007605.1 + 133131 0.66 0.505507
Target:  5'- uGGUGgaGGuGGGgagggucuuUugGCCCAGGGCUgGa -3'
miRNA:   3'- -CCGCgaCC-CCC---------GugCGGGUCUCGGgC- -5'
33303 3' -65.7 NC_007605.1 + 161470 0.66 0.496524
Target:  5'- cGGgGCUGGGcugcgcaaGCAgGCCgGGGGCUCu -3'
miRNA:   3'- -CCgCGACCCc-------CGUgCGGgUCUCGGGc -5'
33303 3' -65.7 NC_007605.1 + 133280 0.66 0.487613
Target:  5'- aGCGCUucGGGGGaCACGCgCAGugaguugcgaaGGCuuGg -3'
miRNA:   3'- cCGCGA--CCCCC-GUGCGgGUC-----------UCGggC- -5'
33303 3' -65.7 NC_007605.1 + 115959 0.66 0.487613
Target:  5'- uGCuGCUcGGGGCAugcUGCCCGGcGGCCUa -3'
miRNA:   3'- cCG-CGAcCCCCGU---GCGGGUC-UCGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.