Results 61 - 80 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33303 | 5' | -55.4 | NC_007605.1 | + | 85079 | 0.67 | 0.919691 |
Target: 5'- uUCCGGUGGCcGGGACugUUUcGUUGGg -3' miRNA: 3'- -GGGCUACUGaCCUUGugGGA-CGACCg -5' |
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33303 | 5' | -55.4 | NC_007605.1 | + | 22171 | 0.67 | 0.921902 |
Target: 5'- cCCCGgcGGCUGGccccgaggaGGCGCCaggcgcggggccgguCgGCUGGCu -3' miRNA: 3'- -GGGCuaCUGACC---------UUGUGG---------------GaCGACCG- -5' |
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33303 | 5' | -55.4 | NC_007605.1 | + | 159696 | 0.67 | 0.925149 |
Target: 5'- cCCCGGccGGCUGGGGCacgagaGCCCgGCccguccGGCg -3' miRNA: 3'- -GGGCUa-CUGACCUUG------UGGGaCGa-----CCG- -5' |
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33303 | 5' | -55.4 | NC_007605.1 | + | 69167 | 0.67 | 0.913999 |
Target: 5'- -aUGAUGGCUGGAGugacggcccuCACCgCgUGCUuGGCg -3' miRNA: 3'- ggGCUACUGACCUU----------GUGG-G-ACGA-CCG- -5' |
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33303 | 5' | -55.4 | NC_007605.1 | + | 23158 | 0.67 | 0.927267 |
Target: 5'- gCCCGGgggucgGGCUGGGccGCcaggggggcaaaaggGCUCUGgaGGCa -3' miRNA: 3'- -GGGCUa-----CUGACCU--UG---------------UGGGACgaCCG- -5' |
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33303 | 5' | -55.4 | NC_007605.1 | + | 39917 | 0.67 | 0.925149 |
Target: 5'- uUCGAUGgGCgUGGuccGCuuGCUCUGCUGGCc -3' miRNA: 3'- gGGCUAC-UG-ACCu--UG--UGGGACGACCG- -5' |
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33303 | 5' | -55.4 | NC_007605.1 | + | 52485 | 0.66 | 0.948941 |
Target: 5'- uCCCGGaGGCUGGAcuccugacCAgCCUGUaGGUg -3' miRNA: 3'- -GGGCUaCUGACCUu-------GUgGGACGaCCG- -5' |
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33303 | 5' | -55.4 | NC_007605.1 | + | 92393 | 0.66 | 0.953009 |
Target: 5'- gCCUauGGUGGCaGGAAucauCACCCgguUGCUGGg -3' miRNA: 3'- -GGG--CUACUGaCCUU----GUGGG---ACGACCg -5' |
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33303 | 5' | -55.4 | NC_007605.1 | + | 110754 | 0.66 | 0.953009 |
Target: 5'- aUCUGA--ACUGGGGCAUaaaCaggGCUGGCa -3' miRNA: 3'- -GGGCUacUGACCUUGUGg--Ga--CGACCG- -5' |
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33303 | 5' | -55.4 | NC_007605.1 | + | 34037 | 0.66 | 0.944203 |
Target: 5'- gCCCGggGAaguggaggGGGAuCGCCCgggucucUGUUGGCa -3' miRNA: 3'- -GGGCuaCUga------CCUU-GUGGG-------ACGACCG- -5' |
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33303 | 5' | -55.4 | NC_007605.1 | + | 30968 | 0.66 | 0.944203 |
Target: 5'- gCCCGggGAaguggaggGGGAuCGCCCgggucucUGUUGGCa -3' miRNA: 3'- -GGGCuaCUga------CCUU-GUGGG-------ACGACCG- -5' |
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33303 | 5' | -55.4 | NC_007605.1 | + | 27900 | 0.66 | 0.944203 |
Target: 5'- gCCCGggGAaguggaggGGGAuCGCCCgggucucUGUUGGCa -3' miRNA: 3'- -GGGCuaCUga------CCUU-GUGGG-------ACGACCG- -5' |
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33303 | 5' | -55.4 | NC_007605.1 | + | 24831 | 0.66 | 0.944203 |
Target: 5'- gCCCGggGAaguggaggGGGAuCGCCCgggucucUGUUGGCa -3' miRNA: 3'- -GGGCuaCUga------CCUU-GUGGG-------ACGACCG- -5' |
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33303 | 5' | -55.4 | NC_007605.1 | + | 21762 | 0.66 | 0.944203 |
Target: 5'- gCCCGggGAaguggaggGGGAuCGCCCgggucucUGUUGGCa -3' miRNA: 3'- -GGGCuaCUga------CCUU-GUGGG-------ACGACCG- -5' |
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33303 | 5' | -55.4 | NC_007605.1 | + | 18693 | 0.66 | 0.944203 |
Target: 5'- gCCCGggGAaguggaggGGGAuCGCCCgggucucUGUUGGCa -3' miRNA: 3'- -GGGCuaCUga------CCUU-GUGGG-------ACGACCG- -5' |
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33303 | 5' | -55.4 | NC_007605.1 | + | 15624 | 0.66 | 0.944203 |
Target: 5'- gCCCGggGAaguggaggGGGAuCGCCCgggucucUGUUGGCa -3' miRNA: 3'- -GGGCuaCUga------CCUU-GUGGG-------ACGACCG- -5' |
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33303 | 5' | -55.4 | NC_007605.1 | + | 12555 | 0.66 | 0.944203 |
Target: 5'- gCCCGggGAaguggaggGGGAuCGCCCgggucucUGUUGGCa -3' miRNA: 3'- -GGGCuaCUga------CCUU-GUGGG-------ACGACCG- -5' |
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33303 | 5' | -55.4 | NC_007605.1 | + | 60052 | 0.66 | 0.940121 |
Target: 5'- gCgGGUGGCUGGAACAg---GCgGGCg -3' miRNA: 3'- gGgCUACUGACCUUGUgggaCGaCCG- -5' |
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33303 | 5' | -55.4 | NC_007605.1 | + | 136557 | 0.66 | 0.935364 |
Target: 5'- gCCCGcgGGCgGGGACccggguGCCUUcUUGGCg -3' miRNA: 3'- -GGGCuaCUGaCCUUG------UGGGAcGACCG- -5' |
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33303 | 5' | -55.4 | NC_007605.1 | + | 2297 | 0.66 | 0.953009 |
Target: 5'- uUCCGcgGACcaugUGGAAgGCCUUGCcauccagucUGGUc -3' miRNA: 3'- -GGGCuaCUG----ACCUUgUGGGACG---------ACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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