miRNA display CGI


Results 41 - 60 of 100 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33303 5' -55.4 NC_007605.1 + 38713 0.68 0.867795
Target:  5'- uCCgGGUGGg-GGGugGCCCcGCUGGg -3'
miRNA:   3'- -GGgCUACUgaCCUugUGGGaCGACCg -5'
33303 5' -55.4 NC_007605.1 + 38838 0.68 0.867795
Target:  5'- uCCgGGUGGg-GGGugGCCCcGCUGGg -3'
miRNA:   3'- -GGgCUACUgaCCUugUGGGaCGACCg -5'
33303 5' -55.4 NC_007605.1 + 38962 0.68 0.867795
Target:  5'- uCCgGGUGGg-GGGugGCCCcGCUGGg -3'
miRNA:   3'- -GGgCUACUgaCCUugUGGGaCGACCg -5'
33303 5' -55.4 NC_007605.1 + 39087 0.68 0.867795
Target:  5'- uCCgGGUGGg-GGGugGCCCcGCUGGg -3'
miRNA:   3'- -GGgCUACUgaCCUugUGGGaCGACCg -5'
33303 5' -55.4 NC_007605.1 + 39212 0.68 0.867795
Target:  5'- uCCgGGUGGg-GGGugGCCCcGCUGGg -3'
miRNA:   3'- -GGgCUACUgaCCUugUGGGaCGACCg -5'
33303 5' -55.4 NC_007605.1 + 39337 0.68 0.867795
Target:  5'- uCCgGGUGGg-GGGugGCCCcGCUGGg -3'
miRNA:   3'- -GGgCUACUgaCCUugUGGGaCGACCg -5'
33303 5' -55.4 NC_007605.1 + 39462 0.68 0.867795
Target:  5'- uCCgGGUGGg-GGGugGCCCcGCUGGg -3'
miRNA:   3'- -GGgCUACUgaCCUugUGGGaCGACCg -5'
33303 5' -55.4 NC_007605.1 + 39587 0.68 0.867795
Target:  5'- uCCgGGUGGg-GGGugGCCCcGCUGGg -3'
miRNA:   3'- -GGgCUACUgaCCUugUGGGaCGACCg -5'
33303 5' -55.4 NC_007605.1 + 39712 0.68 0.867795
Target:  5'- uCCgGGUGGg-GGGugGCCCcGCUGGg -3'
miRNA:   3'- -GGgCUACUgaCCUugUGGGaCGACCg -5'
33303 5' -55.4 NC_007605.1 + 39917 0.67 0.925149
Target:  5'- uUCGAUGgGCgUGGuccGCuuGCUCUGCUGGCc -3'
miRNA:   3'- gGGCUAC-UG-ACCu--UG--UGGGACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 40552 0.69 0.852661
Target:  5'- gCgGGUGGCgcgGGGu--CCCUGcCUGGCa -3'
miRNA:   3'- gGgCUACUGa--CCUuguGGGAC-GACCG- -5'
33303 5' -55.4 NC_007605.1 + 45380 0.66 0.939655
Target:  5'- aCCGGaGGCUGGcgaccauucgcagGGC-CCCUGCcuccUGGCc -3'
miRNA:   3'- gGGCUaCUGACC-------------UUGuGGGACG----ACCG- -5'
33303 5' -55.4 NC_007605.1 + 48814 0.7 0.810656
Target:  5'- gCCaGAggcUGGCUGagccaccGAGCGCCCgcucggGCUGGCg -3'
miRNA:   3'- gGG-CU---ACUGAC-------CUUGUGGGa-----CGACCG- -5'
33303 5' -55.4 NC_007605.1 + 49783 0.7 0.814972
Target:  5'- -gCGGUGGgUGGAACGCUCcagcuugcggcgaaGCUGGCu -3'
miRNA:   3'- ggGCUACUgACCUUGUGGGa-------------CGACCG- -5'
33303 5' -55.4 NC_007605.1 + 50849 0.66 0.953009
Target:  5'- gCCGucgGGCUGcGAccccguGCGCCCgUGgUGGCc -3'
miRNA:   3'- gGGCua-CUGAC-CU------UGUGGG-ACgACCG- -5'
33303 5' -55.4 NC_007605.1 + 52485 0.66 0.948941
Target:  5'- uCCCGGaGGCUGGAcuccugacCAgCCUGUaGGUg -3'
miRNA:   3'- -GGGCUaCUGACCUu-------GUgGGACGaCCG- -5'
33303 5' -55.4 NC_007605.1 + 54989 1.12 0.00238
Target:  5'- gCCCGAUGACUGGAACACCCUGCUGGCc -3'
miRNA:   3'- -GGGCUACUGACCUUGUGGGACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 60052 0.66 0.940121
Target:  5'- gCgGGUGGCUGGAACAg---GCgGGCg -3'
miRNA:   3'- gGgCUACUGACCUUGUgggaCGaCCG- -5'
33303 5' -55.4 NC_007605.1 + 61059 0.66 0.953009
Target:  5'- cUCCGAUGcCUGGGAguCCCccCaGGCg -3'
miRNA:   3'- -GGGCUACuGACCUUguGGGacGaCCG- -5'
33303 5' -55.4 NC_007605.1 + 61195 0.69 0.836744
Target:  5'- aCCCGcucuCUGGc-CGCCCUgcGCUGGCu -3'
miRNA:   3'- -GGGCuacuGACCuuGUGGGA--CGACCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.