miRNA display CGI


Results 61 - 80 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33303 5' -55.4 NC_007605.1 + 61846 0.7 0.793898
Target:  5'- cCUCGAUGACcgagucUGGGACGCCgUaaGUUGGUc -3'
miRNA:   3'- -GGGCUACUG------ACCUUGUGGgA--CGACCG- -5'
33303 5' -55.4 NC_007605.1 + 61879 0.72 0.678604
Target:  5'- aCCG-UGGCgggGGAcuACGCCaugaUGCUGGCc -3'
miRNA:   3'- gGGCuACUGa--CCU--UGUGGg---ACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 69167 0.67 0.913999
Target:  5'- -aUGAUGGCUGGAGugacggcccuCACCgCgUGCUuGGCg -3'
miRNA:   3'- ggGCUACUGACCUU----------GUGG-G-ACGA-CCG- -5'
33303 5' -55.4 NC_007605.1 + 73596 0.68 0.88893
Target:  5'- gCCCGGgaGCUGGuggaGCUCgcgcGCUGGCa -3'
miRNA:   3'- -GGGCUacUGACCuug-UGGGa---CGACCG- -5'
33303 5' -55.4 NC_007605.1 + 73645 0.66 0.934875
Target:  5'- cCCCGAUGAC-GGAcucaugcGgGCCUggGCcgGGCu -3'
miRNA:   3'- -GGGCUACUGaCCU-------UgUGGGa-CGa-CCG- -5'
33303 5' -55.4 NC_007605.1 + 75556 0.68 0.875055
Target:  5'- aCCUGcagGGCUucacuaGAAUACCCUGCaUGGCc -3'
miRNA:   3'- -GGGCua-CUGAc-----CUUGUGGGACG-ACCG- -5'
33303 5' -55.4 NC_007605.1 + 77593 0.69 0.852661
Target:  5'- gCCUGAcgcuUGGCUGGuggUGCCUgggcggggUGCUGGCg -3'
miRNA:   3'- -GGGCU----ACUGACCuu-GUGGG--------ACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 84738 0.66 0.940121
Target:  5'- aCC-AUGuACUuGGACACCCUGCaUGGa -3'
miRNA:   3'- gGGcUAC-UGAcCUUGUGGGACG-ACCg -5'
33303 5' -55.4 NC_007605.1 + 85079 0.67 0.919691
Target:  5'- uUCCGGUGGCcGGGACugUUUcGUUGGg -3'
miRNA:   3'- -GGGCUACUGaCCUUGugGGA-CGACCg -5'
33303 5' -55.4 NC_007605.1 + 88600 0.66 0.935364
Target:  5'- --aGAUGAUUGGA--GCCCguggGCcGGCg -3'
miRNA:   3'- gggCUACUGACCUugUGGGa---CGaCCG- -5'
33303 5' -55.4 NC_007605.1 + 91324 0.81 0.261268
Target:  5'- gCCGGgucaagUGGCUGGGGCACCgggGCUGGCg -3'
miRNA:   3'- gGGCU------ACUGACCUUGUGGga-CGACCG- -5'
33303 5' -55.4 NC_007605.1 + 92393 0.66 0.953009
Target:  5'- gCCUauGGUGGCaGGAAucauCACCCgguUGCUGGg -3'
miRNA:   3'- -GGG--CUACUGaCCUU----GUGGG---ACGACCg -5'
33303 5' -55.4 NC_007605.1 + 103636 0.69 0.850322
Target:  5'- gCCUGGUG-CUGGAaguuaaccgccauaACGCCauCUGCgUGGCc -3'
miRNA:   3'- -GGGCUACuGACCU--------------UGUGG--GACG-ACCG- -5'
33303 5' -55.4 NC_007605.1 + 105807 0.71 0.757004
Target:  5'- aCCUGGgagucuCUGGGACGCCC--CUGGCa -3'
miRNA:   3'- -GGGCUacu---GACCUUGUGGGacGACCG- -5'
33303 5' -55.4 NC_007605.1 + 108820 0.66 0.944646
Target:  5'- aUCCGuaaGACcuuGAGCACCgCgGCUGGCu -3'
miRNA:   3'- -GGGCua-CUGac-CUUGUGG-GaCGACCG- -5'
33303 5' -55.4 NC_007605.1 + 110754 0.66 0.953009
Target:  5'- aUCUGA--ACUGGGGCAUaaaCaggGCUGGCa -3'
miRNA:   3'- -GGGCUacUGACCUUGUGg--Ga--CGACCG- -5'
33303 5' -55.4 NC_007605.1 + 111897 0.68 0.888257
Target:  5'- aCCUGGUGAggugugcCaGGAAUGCCUcuaUGUUGGCa -3'
miRNA:   3'- -GGGCUACU-------GaCCUUGUGGG---ACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 112684 0.66 0.940121
Target:  5'- gCCCGAUGACccGAugcuCGCCCgcagGUaugGGCa -3'
miRNA:   3'- -GGGCUACUGacCUu---GUGGGa---CGa--CCG- -5'
33303 5' -55.4 NC_007605.1 + 113997 0.67 0.908075
Target:  5'- gCCGG-GGCccacGuGAACAUCCUGCgUGGCu -3'
miRNA:   3'- gGGCUaCUGa---C-CUUGUGGGACG-ACCG- -5'
33303 5' -55.4 NC_007605.1 + 121143 0.73 0.616964
Target:  5'- gCUGGUGGCUGGgu-GCCCUccaagucGCUGGCu -3'
miRNA:   3'- gGGCUACUGACCuugUGGGA-------CGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.