miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33303 5' -55.4 NC_007605.1 + 38588 0.68 0.867795
Target:  5'- uCCgGGUGGg-GGGugGCCCcGCUGGg -3'
miRNA:   3'- -GGgCUACUgaCCUugUGGGaCGACCg -5'
33303 5' -55.4 NC_007605.1 + 38463 0.68 0.867795
Target:  5'- uCCgGGUGGg-GGGugGCCCcGCUGGg -3'
miRNA:   3'- -GGgCUACUgaCCUugUGGGaCGACCg -5'
33303 5' -55.4 NC_007605.1 + 38338 0.68 0.867795
Target:  5'- uCCgGGUGGg-GGGugGCCCcGCUGGg -3'
miRNA:   3'- -GGgCUACUgaCCUugUGGGaCGACCg -5'
33303 5' -55.4 NC_007605.1 + 3667 0.68 0.860329
Target:  5'- gCCCGggGuaggucccCUGGAcCugCC-GCUGGCg -3'
miRNA:   3'- -GGGCuaCu-------GACCUuGugGGaCGACCG- -5'
33303 5' -55.4 NC_007605.1 + 77593 0.69 0.852661
Target:  5'- gCCUGAcgcuUGGCUGGuggUGCCUgggcggggUGCUGGCg -3'
miRNA:   3'- -GGGCU----ACUGACCuu-GUGGG--------ACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 103636 0.69 0.850322
Target:  5'- gCCUGGUG-CUGGAaguuaaccgccauaACGCCauCUGCgUGGCc -3'
miRNA:   3'- -GGGCUACuGACCU--------------UGUGG--GACG-ACCG- -5'
33303 5' -55.4 NC_007605.1 + 4394 0.69 0.844797
Target:  5'- gCCUGGUGACcugccuggUGGAGaugGCCCUgGCcgGGCa -3'
miRNA:   3'- -GGGCUACUG--------ACCUUg--UGGGA-CGa-CCG- -5'
33303 5' -55.4 NC_007605.1 + 12533 0.74 0.576656
Target:  5'- aCCgGGUG-CUGGGACcucggguGCCC-GCUGGCu -3'
miRNA:   3'- -GGgCUACuGACCUUG-------UGGGaCGACCG- -5'
33303 5' -55.4 NC_007605.1 + 157461 0.73 0.628099
Target:  5'- aCCGcAUG-CUGGGAgACCUUGCgcgGGCc -3'
miRNA:   3'- gGGC-UACuGACCUUgUGGGACGa--CCG- -5'
33303 5' -55.4 NC_007605.1 + 61879 0.72 0.678604
Target:  5'- aCCG-UGGCgggGGAcuACGCCaugaUGCUGGCc -3'
miRNA:   3'- gGGCuACUGa--CCU--UGUGGg---ACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 105807 0.71 0.757004
Target:  5'- aCCUGGgagucuCUGGGACGCCC--CUGGCa -3'
miRNA:   3'- -GGGCUacu---GACCUUGUGGGacGACCG- -5'
33303 5' -55.4 NC_007605.1 + 10963 0.7 0.770142
Target:  5'- gCCgGGUGACUGGuggggggcaucugggGGC-CCUUGUUGGUa -3'
miRNA:   3'- -GGgCUACUGACC---------------UUGuGGGACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 15602 0.74 0.576656
Target:  5'- aCCgGGUG-CUGGGACcucggguGCCC-GCUGGCu -3'
miRNA:   3'- -GGgCUACuGACCUUG-------UGGGaCGACCG- -5'
33303 5' -55.4 NC_007605.1 + 18671 0.74 0.576656
Target:  5'- aCCgGGUG-CUGGGACcucggguGCCC-GCUGGCu -3'
miRNA:   3'- -GGgCUACuGACCUUG-------UGGGaCGACCG- -5'
33303 5' -55.4 NC_007605.1 + 21740 0.74 0.576656
Target:  5'- aCCgGGUG-CUGGGACcucggguGCCC-GCUGGCu -3'
miRNA:   3'- -GGgCUACuGACCUUG-------UGGGaCGACCG- -5'
33303 5' -55.4 NC_007605.1 + 24809 0.74 0.576656
Target:  5'- aCCgGGUG-CUGGGACcucggguGCCC-GCUGGCu -3'
miRNA:   3'- -GGgCUACuGACCUUG-------UGGGaCGACCG- -5'
33303 5' -55.4 NC_007605.1 + 27878 0.74 0.576656
Target:  5'- aCCgGGUG-CUGGGACcucggguGCCC-GCUGGCu -3'
miRNA:   3'- -GGgCUACuGACCUUG-------UGGGaCGACCG- -5'
33303 5' -55.4 NC_007605.1 + 30947 0.74 0.576656
Target:  5'- aCCgGGUG-CUGGGACcucggguGCCC-GCUGGCu -3'
miRNA:   3'- -GGgCUACuGACCUUG-------UGGGaCGACCG- -5'
33303 5' -55.4 NC_007605.1 + 34016 0.74 0.576656
Target:  5'- aCCgGGUG-CUGGGACcucggguGCCC-GCUGGCu -3'
miRNA:   3'- -GGgCUACuGACCUUG-------UGGGaCGACCG- -5'
33303 5' -55.4 NC_007605.1 + 2297 0.66 0.953009
Target:  5'- uUCCGcgGACcaugUGGAAgGCCUUGCcauccagucUGGUc -3'
miRNA:   3'- -GGGCuaCUG----ACCUUgUGGGACG---------ACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.