miRNA display CGI


Results 61 - 80 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33303 5' -55.4 NC_007605.1 + 77593 0.69 0.852661
Target:  5'- gCCUGAcgcuUGGCUGGuggUGCCUgggcggggUGCUGGCg -3'
miRNA:   3'- -GGGCU----ACUGACCuu-GUGGG--------ACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 103636 0.69 0.850322
Target:  5'- gCCUGGUG-CUGGAaguuaaccgccauaACGCCauCUGCgUGGCc -3'
miRNA:   3'- -GGGCUACuGACCU--------------UGUGG--GACG-ACCG- -5'
33303 5' -55.4 NC_007605.1 + 4394 0.69 0.844797
Target:  5'- gCCUGGUGACcugccuggUGGAGaugGCCCUgGCcgGGCa -3'
miRNA:   3'- -GGGCUACUG--------ACCUUg--UGGGA-CGa-CCG- -5'
33303 5' -55.4 NC_007605.1 + 157366 0.69 0.836744
Target:  5'- uCCCGggGGCcguggGGGGCACCggugUGgUGGCg -3'
miRNA:   3'- -GGGCuaCUGa----CCUUGUGGg---ACgACCG- -5'
33303 5' -55.4 NC_007605.1 + 158149 0.7 0.793898
Target:  5'- cUCCGucUGGCUGGcguagcggcGCACCCcGUUGGCc -3'
miRNA:   3'- -GGGCu-ACUGACCu--------UGUGGGaCGACCG- -5'
33303 5' -55.4 NC_007605.1 + 61846 0.7 0.793898
Target:  5'- cCUCGAUGACcgagucUGGGACGCCgUaaGUUGGUc -3'
miRNA:   3'- -GGGCUACUG------ACCUUGUGGgA--CGACCG- -5'
33303 5' -55.4 NC_007605.1 + 39337 0.68 0.867795
Target:  5'- uCCgGGUGGg-GGGugGCCCcGCUGGg -3'
miRNA:   3'- -GGgCUACUgaCCUugUGGGaCGACCg -5'
33303 5' -55.4 NC_007605.1 + 39462 0.68 0.867795
Target:  5'- uCCgGGUGGg-GGGugGCCCcGCUGGg -3'
miRNA:   3'- -GGgCUACUgaCCUugUGGGaCGACCg -5'
33303 5' -55.4 NC_007605.1 + 39587 0.68 0.867795
Target:  5'- uCCgGGUGGg-GGGugGCCCcGCUGGg -3'
miRNA:   3'- -GGgCUACUgaCCUugUGGGaCGACCg -5'
33303 5' -55.4 NC_007605.1 + 110754 0.66 0.953009
Target:  5'- aUCUGA--ACUGGGGCAUaaaCaggGCUGGCa -3'
miRNA:   3'- -GGGCUacUGACCUUGUGg--Ga--CGACCG- -5'
33303 5' -55.4 NC_007605.1 + 92393 0.66 0.953009
Target:  5'- gCCUauGGUGGCaGGAAucauCACCCgguUGCUGGg -3'
miRNA:   3'- -GGG--CUACUGaCCUU----GUGGG---ACGACCg -5'
33303 5' -55.4 NC_007605.1 + 52485 0.66 0.948941
Target:  5'- uCCCGGaGGCUGGAcuccugacCAgCCUGUaGGUg -3'
miRNA:   3'- -GGGCUaCUGACCUu-------GUgGGACGaCCG- -5'
33303 5' -55.4 NC_007605.1 + 132091 0.66 0.944646
Target:  5'- gCUGGUGGCUGG-GCucCCCUG--GGCa -3'
miRNA:   3'- gGGCUACUGACCuUGu-GGGACgaCCG- -5'
33303 5' -55.4 NC_007605.1 + 34037 0.66 0.944203
Target:  5'- gCCCGggGAaguggaggGGGAuCGCCCgggucucUGUUGGCa -3'
miRNA:   3'- -GGGCuaCUga------CCUU-GUGGG-------ACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 30968 0.66 0.944203
Target:  5'- gCCCGggGAaguggaggGGGAuCGCCCgggucucUGUUGGCa -3'
miRNA:   3'- -GGGCuaCUga------CCUU-GUGGG-------ACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 27900 0.66 0.944203
Target:  5'- gCCCGggGAaguggaggGGGAuCGCCCgggucucUGUUGGCa -3'
miRNA:   3'- -GGGCuaCUga------CCUU-GUGGG-------ACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 24831 0.66 0.944203
Target:  5'- gCCCGggGAaguggaggGGGAuCGCCCgggucucUGUUGGCa -3'
miRNA:   3'- -GGGCuaCUga------CCUU-GUGGG-------ACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 75556 0.68 0.875055
Target:  5'- aCCUGcagGGCUucacuaGAAUACCCUGCaUGGCc -3'
miRNA:   3'- -GGGCua-CUGAc-----CUUGUGGGACG-ACCG- -5'
33303 5' -55.4 NC_007605.1 + 134565 0.68 0.875055
Target:  5'- gUCGGUGuugccCUGGGGCGCCCcucgcccaUGCUugcGGCg -3'
miRNA:   3'- gGGCUACu----GACCUUGUGGG--------ACGA---CCG- -5'
33303 5' -55.4 NC_007605.1 + 39712 0.68 0.867795
Target:  5'- uCCgGGUGGg-GGGugGCCCcGCUGGg -3'
miRNA:   3'- -GGgCUACUgaCCUugUGGGaCGACCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.