miRNA display CGI


Results 81 - 100 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33303 5' -55.4 NC_007605.1 + 24831 0.66 0.944203
Target:  5'- gCCCGggGAaguggaggGGGAuCGCCCgggucucUGUUGGCa -3'
miRNA:   3'- -GGGCuaCUga------CCUU-GUGGG-------ACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 27900 0.66 0.944203
Target:  5'- gCCCGggGAaguggaggGGGAuCGCCCgggucucUGUUGGCa -3'
miRNA:   3'- -GGGCuaCUga------CCUU-GUGGG-------ACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 30968 0.66 0.944203
Target:  5'- gCCCGggGAaguggaggGGGAuCGCCCgggucucUGUUGGCa -3'
miRNA:   3'- -GGGCuaCUga------CCUU-GUGGG-------ACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 34037 0.66 0.944203
Target:  5'- gCCCGggGAaguggaggGGGAuCGCCCgggucucUGUUGGCa -3'
miRNA:   3'- -GGGCuaCUga------CCUU-GUGGG-------ACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 132091 0.66 0.944646
Target:  5'- gCUGGUGGCUGG-GCucCCCUG--GGCa -3'
miRNA:   3'- gGGCUACUGACCuUGu-GGGACgaCCG- -5'
33303 5' -55.4 NC_007605.1 + 52485 0.66 0.948941
Target:  5'- uCCCGGaGGCUGGAcuccugacCAgCCUGUaGGUg -3'
miRNA:   3'- -GGGCUaCUGACCUu-------GUgGGACGaCCG- -5'
33303 5' -55.4 NC_007605.1 + 92393 0.66 0.953009
Target:  5'- gCCUauGGUGGCaGGAAucauCACCCgguUGCUGGg -3'
miRNA:   3'- -GGG--CUACUGaCCUU----GUGGG---ACGACCg -5'
33303 5' -55.4 NC_007605.1 + 12555 0.66 0.944203
Target:  5'- gCCCGggGAaguggaggGGGAuCGCCCgggucucUGUUGGCa -3'
miRNA:   3'- -GGGCuaCUga------CCUU-GUGGG-------ACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 60052 0.66 0.940121
Target:  5'- gCgGGUGGCUGGAACAg---GCgGGCg -3'
miRNA:   3'- gGgCUACUGACCUUGUgggaCGaCCG- -5'
33303 5' -55.4 NC_007605.1 + 39337 0.68 0.867795
Target:  5'- uCCgGGUGGg-GGGugGCCCcGCUGGg -3'
miRNA:   3'- -GGgCUACUgaCCUugUGGGaCGACCg -5'
33303 5' -55.4 NC_007605.1 + 39462 0.68 0.867795
Target:  5'- uCCgGGUGGg-GGGugGCCCcGCUGGg -3'
miRNA:   3'- -GGgCUACUgaCCUugUGGGaCGACCg -5'
33303 5' -55.4 NC_007605.1 + 39587 0.68 0.867795
Target:  5'- uCCgGGUGGg-GGGugGCCCcGCUGGg -3'
miRNA:   3'- -GGgCUACUgaCCUugUGGGaCGACCg -5'
33303 5' -55.4 NC_007605.1 + 39712 0.68 0.867795
Target:  5'- uCCgGGUGGg-GGGugGCCCcGCUGGg -3'
miRNA:   3'- -GGgCUACUgaCCUugUGGGaCGACCg -5'
33303 5' -55.4 NC_007605.1 + 134565 0.68 0.875055
Target:  5'- gUCGGUGuugccCUGGGGCGCCCcucgcccaUGCUugcGGCg -3'
miRNA:   3'- gGGCUACu----GACCUUGUGGG--------ACGA---CCG- -5'
33303 5' -55.4 NC_007605.1 + 75556 0.68 0.875055
Target:  5'- aCCUGcagGGCUucacuaGAAUACCCUGCaUGGCc -3'
miRNA:   3'- -GGGCua-CUGAc-----CUUGUGGGACG-ACCG- -5'
33303 5' -55.4 NC_007605.1 + 111897 0.68 0.888257
Target:  5'- aCCUGGUGAggugugcCaGGAAUGCCUcuaUGUUGGCa -3'
miRNA:   3'- -GGGCUACU-------GaCCUUGUGGG---ACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 39917 0.67 0.925149
Target:  5'- uUCGAUGgGCgUGGuccGCuuGCUCUGCUGGCc -3'
miRNA:   3'- gGGCUAC-UG-ACCu--UG--UGGGACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 126098 0.66 0.928312
Target:  5'- gCCCGGaGACUGGuGGCcCuCCUGCgaagggaagauggGGCa -3'
miRNA:   3'- -GGGCUaCUGACC-UUGuG-GGACGa------------CCG- -5'
33303 5' -55.4 NC_007605.1 + 136557 0.66 0.935364
Target:  5'- gCCCGcgGGCgGGGACccggguGCCUUcUUGGCg -3'
miRNA:   3'- -GGGCuaCUGaCCUUG------UGGGAcGACCG- -5'
33303 5' -55.4 NC_007605.1 + 110754 0.66 0.953009
Target:  5'- aUCUGA--ACUGGGGCAUaaaCaggGCUGGCa -3'
miRNA:   3'- -GGGCUacUGACCUUGUGg--Ga--CGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.