miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33303 5' -55.4 NC_007605.1 + 27900 0.66 0.944203
Target:  5'- gCCCGggGAaguggaggGGGAuCGCCCgggucucUGUUGGCa -3'
miRNA:   3'- -GGGCuaCUga------CCUU-GUGGG-------ACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 24831 0.66 0.944203
Target:  5'- gCCCGggGAaguggaggGGGAuCGCCCgggucucUGUUGGCa -3'
miRNA:   3'- -GGGCuaCUga------CCUU-GUGGG-------ACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 34037 0.66 0.944203
Target:  5'- gCCCGggGAaguggaggGGGAuCGCCCgggucucUGUUGGCa -3'
miRNA:   3'- -GGGCuaCUga------CCUU-GUGGG-------ACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 30968 0.66 0.944203
Target:  5'- gCCCGggGAaguggaggGGGAuCGCCCgggucucUGUUGGCa -3'
miRNA:   3'- -GGGCuaCUga------CCUU-GUGGG-------ACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 12555 0.66 0.944203
Target:  5'- gCCCGggGAaguggaggGGGAuCGCCCgggucucUGUUGGCa -3'
miRNA:   3'- -GGGCuaCUga------CCUU-GUGGG-------ACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 164911 0.66 0.941958
Target:  5'- cCCCGGUcgaGGCgUGGGucGCGCCCUcGCcgccggacgacaaggUGGCu -3'
miRNA:   3'- -GGGCUA---CUG-ACCU--UGUGGGA-CG---------------ACCG- -5'
33303 5' -55.4 NC_007605.1 + 60052 0.66 0.940121
Target:  5'- gCgGGUGGCUGGAACAg---GCgGGCg -3'
miRNA:   3'- gGgCUACUGACCUUGUgggaCGaCCG- -5'
33303 5' -55.4 NC_007605.1 + 84738 0.66 0.940121
Target:  5'- aCC-AUGuACUuGGACACCCUGCaUGGa -3'
miRNA:   3'- gGGcUAC-UGAcCUUGUGGGACG-ACCg -5'
33303 5' -55.4 NC_007605.1 + 112684 0.66 0.940121
Target:  5'- gCCCGAUGACccGAugcuCGCCCgcagGUaugGGCa -3'
miRNA:   3'- -GGGCUACUGacCUu---GUGGGa---CGa--CCG- -5'
33303 5' -55.4 NC_007605.1 + 45380 0.66 0.939655
Target:  5'- aCCGGaGGCUGGcgaccauucgcagGGC-CCCUGCcuccUGGCc -3'
miRNA:   3'- gGGCUaCUGACC-------------UUGuGGGACG----ACCG- -5'
33303 5' -55.4 NC_007605.1 + 136557 0.66 0.935364
Target:  5'- gCCCGcgGGCgGGGACccggguGCCUUcUUGGCg -3'
miRNA:   3'- -GGGCuaCUGaCCUUG------UGGGAcGACCG- -5'
33303 5' -55.4 NC_007605.1 + 88600 0.66 0.935364
Target:  5'- --aGAUGAUUGGA--GCCCguggGCcGGCg -3'
miRNA:   3'- gggCUACUGACCUugUGGGa---CGaCCG- -5'
33303 5' -55.4 NC_007605.1 + 73645 0.66 0.934875
Target:  5'- cCCCGAUGAC-GGAcucaugcGgGCCUggGCcgGGCu -3'
miRNA:   3'- -GGGCUACUGaCCU-------UgUGGGa-CGa-CCG- -5'
33303 5' -55.4 NC_007605.1 + 126098 0.66 0.928312
Target:  5'- gCCCGGaGACUGGuGGCcCuCCUGCgaagggaagauggGGCa -3'
miRNA:   3'- -GGGCUaCUGACC-UUGuG-GGACGa------------CCG- -5'
33303 5' -55.4 NC_007605.1 + 23158 0.67 0.927267
Target:  5'- gCCCGGgggucgGGCUGGGccGCcaggggggcaaaaggGCUCUGgaGGCa -3'
miRNA:   3'- -GGGCUa-----CUGACCU--UG---------------UGGGACgaCCG- -5'
33303 5' -55.4 NC_007605.1 + 39917 0.67 0.925149
Target:  5'- uUCGAUGgGCgUGGuccGCuuGCUCUGCUGGCc -3'
miRNA:   3'- gGGCUAC-UG-ACCu--UG--UGGGACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 159696 0.67 0.925149
Target:  5'- cCCCGGccGGCUGGGGCacgagaGCCCgGCccguccGGCg -3'
miRNA:   3'- -GGGCUa-CUGACCUUG------UGGGaCGa-----CCG- -5'
33303 5' -55.4 NC_007605.1 + 22171 0.67 0.921902
Target:  5'- cCCCGgcGGCUGGccccgaggaGGCGCCaggcgcggggccgguCgGCUGGCu -3'
miRNA:   3'- -GGGCuaCUGACC---------UUGUGG---------------GaCGACCG- -5'
33303 5' -55.4 NC_007605.1 + 85079 0.67 0.919691
Target:  5'- uUCCGGUGGCcGGGACugUUUcGUUGGg -3'
miRNA:   3'- -GGGCUACUGaCCUUGugGGA-CGACCg -5'
33303 5' -55.4 NC_007605.1 + 69167 0.67 0.913999
Target:  5'- -aUGAUGGCUGGAGugacggcccuCACCgCgUGCUuGGCg -3'
miRNA:   3'- ggGCUACUGACCUU----------GUGG-G-ACGA-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.