miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33304 3' -57 NC_007605.1 + 24753 0.66 0.869522
Target:  5'- -cGAGCCUGCUGuCUcagGAGGGGCcuGGCUCc -3'
miRNA:   3'- aaUUCGGGCGGU-GG---CUCCUUG--UCGAG- -5'
33304 3' -57 NC_007605.1 + 62204 0.66 0.869522
Target:  5'- ---uGCCCugcaGCCGCCcAGGggUAGCg- -3'
miRNA:   3'- aauuCGGG----CGGUGGcUCCuuGUCGag -5'
33304 3' -57 NC_007605.1 + 33959 0.66 0.869522
Target:  5'- -cGAGCCUGCUGuCUcagGAGGGGCcuGGCUCc -3'
miRNA:   3'- aaUUCGGGCGGU-GG---CUCCUUG--UCGAG- -5'
33304 3' -57 NC_007605.1 + 30891 0.66 0.869522
Target:  5'- -cGAGCCUGCUGuCUcagGAGGGGCcuGGCUCc -3'
miRNA:   3'- aaUUCGGGCGGU-GG---CUCCUUG--UCGAG- -5'
33304 3' -57 NC_007605.1 + 21684 0.66 0.869522
Target:  5'- -cGAGCCUGCUGuCUcagGAGGGGCcuGGCUCc -3'
miRNA:   3'- aaUUCGGGCGGU-GG---CUCCUUG--UCGAG- -5'
33304 3' -57 NC_007605.1 + 18615 0.66 0.869522
Target:  5'- -cGAGCCUGCUGuCUcagGAGGGGCcuGGCUCc -3'
miRNA:   3'- aaUUCGGGCGGU-GG---CUCCUUG--UCGAG- -5'
33304 3' -57 NC_007605.1 + 15546 0.66 0.869522
Target:  5'- -cGAGCCUGCUGuCUcagGAGGGGCcuGGCUCc -3'
miRNA:   3'- aaUUCGGGCGGU-GG---CUCCUUG--UCGAG- -5'
33304 3' -57 NC_007605.1 + 137157 0.66 0.869522
Target:  5'- --cAGCCCaCCACCGAGGGccaccACcGCg- -3'
miRNA:   3'- aauUCGGGcGGUGGCUCCU-----UGuCGag -5'
33304 3' -57 NC_007605.1 + 27822 0.66 0.869522
Target:  5'- -cGAGCCUGCUGuCUcagGAGGGGCcuGGCUCc -3'
miRNA:   3'- aaUUCGGGCGGU-GG---CUCCUUG--UCGAG- -5'
33304 3' -57 NC_007605.1 + 12477 0.66 0.869522
Target:  5'- -cGAGCCUGCUGuCUcagGAGGGGCcuGGCUCc -3'
miRNA:   3'- aaUUCGGGCGGU-GG---CUCCUUG--UCGAG- -5'
33304 3' -57 NC_007605.1 + 85440 0.66 0.869522
Target:  5'- -gAGGCCU-CUGCCGGGGAACgGGCg- -3'
miRNA:   3'- aaUUCGGGcGGUGGCUCCUUG-UCGag -5'
33304 3' -57 NC_007605.1 + 154873 0.66 0.861985
Target:  5'- ---cGCCUcuuugcagcgGCC-CCGAGGGgcgcagGCGGCUCg -3'
miRNA:   3'- aauuCGGG----------CGGuGGCUCCU------UGUCGAG- -5'
33304 3' -57 NC_007605.1 + 73457 0.66 0.861985
Target:  5'- aUGAGUCCGUCAUCGGGGucgGGgUCc -3'
miRNA:   3'- aAUUCGGGCGGUGGCUCCuugUCgAG- -5'
33304 3' -57 NC_007605.1 + 151048 0.66 0.854238
Target:  5'- -aGAGCgaUGUgGgCGAGGAugGGCUCa -3'
miRNA:   3'- aaUUCGg-GCGgUgGCUCCUugUCGAG- -5'
33304 3' -57 NC_007605.1 + 159923 0.66 0.854238
Target:  5'- -aGAGCuCCGCCACCuccGGGGGCA-CUg -3'
miRNA:   3'- aaUUCG-GGCGGUGGc--UCCUUGUcGAg -5'
33304 3' -57 NC_007605.1 + 104648 0.66 0.849492
Target:  5'- -aGAGCCCaaaaccuguuucggcGCCGcCCGGGGGcCAGuCUCc -3'
miRNA:   3'- aaUUCGGG---------------CGGU-GGCUCCUuGUC-GAG- -5'
33304 3' -57 NC_007605.1 + 87998 0.66 0.846288
Target:  5'- -gAGGCCCGCgGCagGAGGccccGCGGCa- -3'
miRNA:   3'- aaUUCGGGCGgUGg-CUCCu---UGUCGag -5'
33304 3' -57 NC_007605.1 + 163960 0.66 0.843865
Target:  5'- -gAAGCCCggcuccacggugauGCCGCaaAGGAGCGGCa- -3'
miRNA:   3'- aaUUCGGG--------------CGGUGgcUCCUUGUCGag -5'
33304 3' -57 NC_007605.1 + 54718 0.66 0.838142
Target:  5'- --uGGCCCGCCACCccc--GCGGCUa -3'
miRNA:   3'- aauUCGGGCGGUGGcuccuUGUCGAg -5'
33304 3' -57 NC_007605.1 + 114641 0.66 0.838142
Target:  5'- --uGGCauCCGCCgcgaacaguaGCCG-GGAACAGCUUc -3'
miRNA:   3'- aauUCG--GGCGG----------UGGCuCCUUGUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.