miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33304 5' -54.6 NC_007605.1 + 17011 0.66 0.948368
Target:  5'- cGGGCuggGCCgCCAgggggGCAAaaGGGGCUCu -3'
miRNA:   3'- aCCUGugaCGGgGGU-----UGUU--UCUCGAG- -5'
33304 5' -54.6 NC_007605.1 + 35424 0.66 0.948368
Target:  5'- cGGGCuggGCCgCCAgggggGCAAaaGGGGCUCu -3'
miRNA:   3'- aCCUGugaCGGgGGU-----UGUU--UCUCGAG- -5'
33304 5' -54.6 NC_007605.1 + 50459 0.66 0.948368
Target:  5'- ---cCAUUGCCCCCAauGCAuuccGGCUCg -3'
miRNA:   3'- accuGUGACGGGGGU--UGUuuc-UCGAG- -5'
33304 5' -54.6 NC_007605.1 + 32355 0.66 0.948368
Target:  5'- cGGGCuggGCCgCCAgggggGCAAaaGGGGCUCu -3'
miRNA:   3'- aCCUGugaCGGgGGU-----UGUU--UCUCGAG- -5'
33304 5' -54.6 NC_007605.1 + 162823 0.66 0.948368
Target:  5'- ----aGCUGCCCgucuCCGGCAccggggucaGAGAGCUCu -3'
miRNA:   3'- accugUGACGGG----GGUUGU---------UUCUCGAG- -5'
33304 5' -54.6 NC_007605.1 + 13942 0.66 0.948368
Target:  5'- cGGGCuggGCCgCCAgggggGCAAaaGGGGCUCu -3'
miRNA:   3'- aCCUGugaCGGgGGU-----UGUU--UCUCGAG- -5'
33304 5' -54.6 NC_007605.1 + 63013 0.66 0.948368
Target:  5'- -aGACGCccaGCCaCCCcuggcagaggugGACGGGGGGCUCg -3'
miRNA:   3'- acCUGUGa--CGG-GGG------------UUGUUUCUCGAG- -5'
33304 5' -54.6 NC_007605.1 + 29126 0.66 0.948368
Target:  5'- aGGGC-CUGUCCaCCGugGGAGGGgUg -3'
miRNA:   3'- aCCUGuGACGGG-GGUugUUUCUCgAg -5'
33304 5' -54.6 NC_007605.1 + 159244 0.66 0.948368
Target:  5'- aGGuACGCUGCCCCac-CAGAaGGCa- -3'
miRNA:   3'- aCC-UGUGACGGGGguuGUUUcUCGag -5'
33304 5' -54.6 NC_007605.1 + 29286 0.66 0.948368
Target:  5'- cGGGCuggGCCgCCAgggggGCAAaaGGGGCUCu -3'
miRNA:   3'- aCCUGugaCGGgGGU-----UGUU--UCUCGAG- -5'
33304 5' -54.6 NC_007605.1 + 26217 0.66 0.948368
Target:  5'- cGGGCuggGCCgCCAgggggGCAAaaGGGGCUCu -3'
miRNA:   3'- aCCUGugaCGGgGGU-----UGUU--UCUCGAG- -5'
33304 5' -54.6 NC_007605.1 + 48867 0.66 0.948368
Target:  5'- cGGGCaguGCUGCCgCaCAACGcggccuacGAGCUCa -3'
miRNA:   3'- aCCUG---UGACGGgG-GUUGUuu------CUCGAG- -5'
33304 5' -54.6 NC_007605.1 + 20080 0.66 0.948368
Target:  5'- cGGGCuggGCCgCCAgggggGCAAaaGGGGCUCu -3'
miRNA:   3'- aCCUGugaCGGgGGU-----UGUU--UCUCGAG- -5'
33304 5' -54.6 NC_007605.1 + 137140 0.66 0.943918
Target:  5'- aGGACACcaaCCCUCAGCAgcccaccaccGAGGGC-Ca -3'
miRNA:   3'- aCCUGUGac-GGGGGUUGU----------UUCUCGaG- -5'
33304 5' -54.6 NC_007605.1 + 163733 0.66 0.943918
Target:  5'- gGGAaGaaGuCCCCCGGCuuGGAGCUUu -3'
miRNA:   3'- aCCUgUgaC-GGGGGUUGuuUCUCGAG- -5'
33304 5' -54.6 NC_007605.1 + 156942 0.66 0.943918
Target:  5'- gGGACGaacagcgUGCCUCCAACGucuuugaccugGAGGGCa- -3'
miRNA:   3'- aCCUGUg------ACGGGGGUUGU-----------UUCUCGag -5'
33304 5' -54.6 NC_007605.1 + 122055 0.66 0.94346
Target:  5'- aUGGGCGagcggUGCCacuCCCGguacucuGCAAAGAGCUg -3'
miRNA:   3'- -ACCUGUg----ACGG---GGGU-------UGUUUCUCGAg -5'
33304 5' -54.6 NC_007605.1 + 59282 0.66 0.939226
Target:  5'- aUGGAUGugaaUGCCCCCGgggGCGGgaguGGAGgCUCg -3'
miRNA:   3'- -ACCUGUg---ACGGGGGU---UGUU----UCUC-GAG- -5'
33304 5' -54.6 NC_007605.1 + 117441 0.66 0.939226
Target:  5'- gGGACGCUGCCCUC--CAGAucGC-Ca -3'
miRNA:   3'- aCCUGUGACGGGGGuuGUUUcuCGaG- -5'
33304 5' -54.6 NC_007605.1 + 150735 0.66 0.939226
Target:  5'- cUGGACGCUauuCCCCCuccACccGGAGCa- -3'
miRNA:   3'- -ACCUGUGAc--GGGGGu--UGuuUCUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.