miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33305 3' -55.2 NC_007605.1 + 159992 0.66 0.948526
Target:  5'- cGUCgCcUGGCCCU--GGUGCGGGGg- -3'
miRNA:   3'- cCAG-GaACUGGGAcuCCACGUCCUac -5'
33305 3' -55.2 NC_007605.1 + 4500 0.66 0.944167
Target:  5'- cGG-CCUgGugUUUGAGGUGgAGGAg- -3'
miRNA:   3'- -CCaGGAaCugGGACUCCACgUCCUac -5'
33305 3' -55.2 NC_007605.1 + 88720 0.66 0.939573
Target:  5'- gGGaUCCcaugGACCCUGGGuGUGCccaugcacAGGAUc -3'
miRNA:   3'- -CC-AGGaa--CUGGGACUC-CACG--------UCCUAc -5'
33305 3' -55.2 NC_007605.1 + 3787 0.66 0.934744
Target:  5'- -cUCCUUGcuuCCCacggUGGGGUGUgacAGGAUGc -3'
miRNA:   3'- ccAGGAACu--GGG----ACUCCACG---UCCUAC- -5'
33305 3' -55.2 NC_007605.1 + 40305 0.67 0.92437
Target:  5'- --aCCaggGGCCCggcgGGGGUGgGGGGUGc -3'
miRNA:   3'- ccaGGaa-CUGGGa---CUCCACgUCCUAC- -5'
33305 3' -55.2 NC_007605.1 + 33984 0.67 0.92437
Target:  5'- uGGcUCCgccgggUGGCCCUGGGGUaaGUcuGGGAg- -3'
miRNA:   3'- -CC-AGGa-----ACUGGGACUCCA--CG--UCCUac -5'
33305 3' -55.2 NC_007605.1 + 27847 0.67 0.92437
Target:  5'- uGGcUCCgccgggUGGCCCUGGGGUaaGUcuGGGAg- -3'
miRNA:   3'- -CC-AGGa-----ACUGGGACUCCA--CG--UCCUac -5'
33305 3' -55.2 NC_007605.1 + 21709 0.67 0.92437
Target:  5'- uGGcUCCgccgggUGGCCCUGGGGUaaGUcuGGGAg- -3'
miRNA:   3'- -CC-AGGa-----ACUGGGACUCCA--CG--UCCUac -5'
33305 3' -55.2 NC_007605.1 + 18640 0.67 0.92437
Target:  5'- uGGcUCCgccgggUGGCCCUGGGGUaaGUcuGGGAg- -3'
miRNA:   3'- -CC-AGGa-----ACUGGGACUCCA--CG--UCCUac -5'
33305 3' -55.2 NC_007605.1 + 12502 0.67 0.92437
Target:  5'- uGGcUCCgccgggUGGCCCUGGGGUaaGUcuGGGAg- -3'
miRNA:   3'- -CC-AGGa-----ACUGGGACUCCA--CG--UCCUac -5'
33305 3' -55.2 NC_007605.1 + 24778 0.67 0.92437
Target:  5'- uGGcUCCgccgggUGGCCCUGGGGUaaGUcuGGGAg- -3'
miRNA:   3'- -CC-AGGa-----ACUGGGACUCCA--CG--UCCUac -5'
33305 3' -55.2 NC_007605.1 + 15571 0.67 0.92437
Target:  5'- uGGcUCCgccgggUGGCCCUGGGGUaaGUcuGGGAg- -3'
miRNA:   3'- -CC-AGGa-----ACUGGGACUCCA--CG--UCCUac -5'
33305 3' -55.2 NC_007605.1 + 117699 0.67 0.918826
Target:  5'- --aCCUUcACCUccuccaagugGGGGUGCAGGGUGa -3'
miRNA:   3'- ccaGGAAcUGGGa---------CUCCACGUCCUAC- -5'
33305 3' -55.2 NC_007605.1 + 69209 0.67 0.913044
Target:  5'- uGGUCUccagGGCCCUgGAGGUGUcGGcUGu -3'
miRNA:   3'- -CCAGGaa--CUGGGA-CUCCACGuCCuAC- -5'
33305 3' -55.2 NC_007605.1 + 135161 0.67 0.913044
Target:  5'- --gCCUUGuCCaCUGGGGUGCAGa--- -3'
miRNA:   3'- ccaGGAACuGG-GACUCCACGUCcuac -5'
33305 3' -55.2 NC_007605.1 + 149638 0.68 0.880637
Target:  5'- uGUCCcc-GCUCUG-GGUGCAGGAg- -3'
miRNA:   3'- cCAGGaacUGGGACuCCACGUCCUac -5'
33305 3' -55.2 NC_007605.1 + 101024 0.68 0.863851
Target:  5'- aGGUCgc-GGCCCUGGGGuUGCccaccaggaaggugAGGAUGu -3'
miRNA:   3'- -CCAGgaaCUGGGACUCC-ACG--------------UCCUAC- -5'
33305 3' -55.2 NC_007605.1 + 155599 0.68 0.863851
Target:  5'- gGGUCCUgcggucgaaggugcUGGCCUUGAGG-GCgcugAGGAc- -3'
miRNA:   3'- -CCAGGA--------------ACUGGGACUCCaCG----UCCUac -5'
33305 3' -55.2 NC_007605.1 + 159048 0.68 0.858521
Target:  5'- cGGUCCUUGAUCCUGcgccGG-GC-GGAc- -3'
miRNA:   3'- -CCAGGAACUGGGACu---CCaCGuCCUac -5'
33305 3' -55.2 NC_007605.1 + 65510 0.69 0.842747
Target:  5'- uGG-CCUccaugGGCCUcGGGGUGCAGGGc- -3'
miRNA:   3'- -CCaGGAa----CUGGGaCUCCACGUCCUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.