miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33305 5' -56.6 NC_007605.1 + 24303 0.66 0.914961
Target:  5'- uCGgGUCCcccUGGACCCC--GGcCUCAGc -3'
miRNA:   3'- -GCgUAGG---ACCUGGGGuaCCaGAGUCu -5'
33305 5' -56.6 NC_007605.1 + 27372 0.66 0.914961
Target:  5'- uCGgGUCCcccUGGACCCC--GGcCUCAGc -3'
miRNA:   3'- -GCgUAGG---ACCUGGGGuaCCaGAGUCu -5'
33305 5' -56.6 NC_007605.1 + 33510 0.66 0.914961
Target:  5'- uCGgGUCCcccUGGACCCC--GGcCUCAGc -3'
miRNA:   3'- -GCgUAGG---ACCUGGGGuaCCaGAGUCu -5'
33305 5' -56.6 NC_007605.1 + 21234 0.66 0.914961
Target:  5'- uCGgGUCCcccUGGACCCC--GGcCUCAGc -3'
miRNA:   3'- -GCgUAGG---ACCUGGGGuaCCaGAGUCu -5'
33305 5' -56.6 NC_007605.1 + 18165 0.66 0.914961
Target:  5'- uCGgGUCCcccUGGACCCC--GGcCUCAGc -3'
miRNA:   3'- -GCgUAGG---ACCUGGGGuaCCaGAGUCu -5'
33305 5' -56.6 NC_007605.1 + 15096 0.66 0.914961
Target:  5'- uCGgGUCCcccUGGACCCC--GGcCUCAGc -3'
miRNA:   3'- -GCgUAGG---ACCUGGGGuaCCaGAGUCu -5'
33305 5' -56.6 NC_007605.1 + 12027 0.66 0.914961
Target:  5'- uCGgGUCCcccUGGACCCC--GGcCUCAGc -3'
miRNA:   3'- -GCgUAGG---ACCUGGGGuaCCaGAGUCu -5'
33305 5' -56.6 NC_007605.1 + 30441 0.66 0.914961
Target:  5'- uCGgGUCCcccUGGACCCC--GGcCUCAGc -3'
miRNA:   3'- -GCgUAGG---ACCUGGGGuaCCaGAGUCu -5'
33305 5' -56.6 NC_007605.1 + 7226 0.66 0.90908
Target:  5'- gGUuUCCUGGACaCCCA--GUCUUAGu -3'
miRNA:   3'- gCGuAGGACCUG-GGGUacCAGAGUCu -5'
33305 5' -56.6 NC_007605.1 + 106641 0.66 0.896628
Target:  5'- gGCucCCUGGAgccCCCCGUGGUCa---- -3'
miRNA:   3'- gCGuaGGACCU---GGGGUACCAGagucu -5'
33305 5' -56.6 NC_007605.1 + 165962 0.66 0.896628
Target:  5'- gGCGgaguUCCUGaGAgCCCAggGGUCUCGu- -3'
miRNA:   3'- gCGU----AGGAC-CUgGGGUa-CCAGAGUcu -5'
33305 5' -56.6 NC_007605.1 + 71886 0.66 0.883276
Target:  5'- uGCGaUCUGGACCCUAUGGagggCAGc -3'
miRNA:   3'- gCGUaGGACCUGGGGUACCaga-GUCu -5'
33305 5' -56.6 NC_007605.1 + 123080 0.67 0.857074
Target:  5'- gCGCucUCCUGGACCCUaaccugcuccccccgGUGGcCUacaCAGAc -3'
miRNA:   3'- -GCGu-AGGACCUGGGG---------------UACCaGA---GUCU- -5'
33305 5' -56.6 NC_007605.1 + 60922 0.67 0.853998
Target:  5'- aCGCAgUCCuuaggaucaUGGACgCCGUccgagaGGUCUCAGGc -3'
miRNA:   3'- -GCGU-AGG---------ACCUGgGGUA------CCAGAGUCU- -5'
33305 5' -56.6 NC_007605.1 + 96903 0.67 0.846173
Target:  5'- aGCA--CUGGACCCCggGGUCagGGu -3'
miRNA:   3'- gCGUagGACCUGGGGuaCCAGagUCu -5'
33305 5' -56.6 NC_007605.1 + 31793 0.67 0.846173
Target:  5'- gGgAUCC-GGGCCaCUcgGGUCUCGGu -3'
miRNA:   3'- gCgUAGGaCCUGG-GGuaCCAGAGUCu -5'
33305 5' -56.6 NC_007605.1 + 22586 0.67 0.846173
Target:  5'- gGgAUCC-GGGCCaCUcgGGUCUCGGu -3'
miRNA:   3'- gCgUAGGaCCUGG-GGuaCCAGAGUCu -5'
33305 5' -56.6 NC_007605.1 + 16448 0.67 0.846173
Target:  5'- gGgAUCC-GGGCCaCUcgGGUCUCGGu -3'
miRNA:   3'- gCgUAGGaCCUGG-GGuaCCAGAGUCu -5'
33305 5' -56.6 NC_007605.1 + 13379 0.67 0.846173
Target:  5'- gGgAUCC-GGGCCaCUcgGGUCUCGGu -3'
miRNA:   3'- gCgUAGGaCCUGG-GGuaCCAGAGUCu -5'
33305 5' -56.6 NC_007605.1 + 19517 0.67 0.846173
Target:  5'- gGgAUCC-GGGCCaCUcgGGUCUCGGu -3'
miRNA:   3'- gCgUAGGaCCUGG-GGuaCCAGAGUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.